RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA898105" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA898105 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3796145 3796145 PRJNA898105_P_NODE_3963_length_289_cov_1.898148_g3763_i0 PRJNA898105 3963 289 1.898148 5.48564772 Bacteria 2 Bacteria Bacteria 186 1.5399999999999995e-55   NR MCU1289429.1 1978231 g3763 i0 96.9 8.96885813148789 96 3 99.7 0 289 2 93 188 MCU1289429.1 trpB 2 [Acidobacteriota bacterium] diamond 2592 187 0.994652406417112 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
21275811 21275811 PRJNA898105_P_NODE_6937_length_247_cov_1.643678_g6737_i0 PRJNA898105 6937 247 1.643678 4.05988466 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 155 2.6e-45   NR GIU74158.1 2212468 g6737 i0 98.8 0.995951417004049 82 1 99.6 0 246 1 35 116 GIU74158.1 MAG: ribonuclease 3 [Bryobacteraceae bacterium] diamond 246 155 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31319636 31319636 PRJNA898105_P_NODE_7455_length_245_cov_0.895349_g7255_i0 PRJNA898105 7455 245 0.895349 2.19360505 Kocuria sp. cx-455 2771377 Bacteria Bacteria 146 1.8e-40   NR WP_190806833.1 2771377 g7255 i0 96.3 1.98367346938776 81 3 99.2 0 2 244 265 345 WP_190806833.1 GNAT family N-acetyltransferase [Kocuria sp. cx-455] diamond 486 146 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Sulfotelmatobacter Kocuria sp. cx-455

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;