RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA898105" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA898105 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28823946 28823946 PRJNA898105_P_NODE_4448_length_281_cov_2.831731_g4248_i0 PRJNA898105 4448 281 2.831731 7.95716411 Bodo saltans 75058 Euglenozoa other_Eukaryota 76.3 1e-13   NR CUF68560.1 75058 g4248 i0 41.8 0.97153024911032 91 53 97.2 0 277 5 1919 2009 CUF68560.1 membrane-associated protein, putative [Bodo saltans] diamond 273 76.3 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
30821710 30821710 PRJNA898105_P_NODE_7314_length_246_cov_0.890173_g7114_i0 PRJNA898105 7314 246 0.890173 2.18982558 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 62 6.53e-9   NR XP_002668194.1 5762 g7114 i0 44 4.09756097560976 84 42 98.8 4 4 246 74 155 XP_002668194.1 uncharacterized protein NAEGRDRAFT_60092 [Naegleria gruberi] diamond 1008 62.4 0.993589743589744 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;