RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA897077" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA897077 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27024047 27024047 PRJNA897077_P_NODE_15062_length_253_cov_1.722222_g14935_i0 PRJNA897077 15062 253 1.722222 4.35722166 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 61.6 2.97e-9   NR XP_001299604.1 412133 g14935 i0 53.8 0.616600790513834 52 24 61.7 0 2 157 120 171 XP_001299604.1 GTPase protein [Trichomonas vaginalis G3] diamond 156 61.6 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28674073 28674073 PRJNA897077_P_NODE_5067_length_431_cov_1.304469_g4940_i0 PRJNA897077 5067 431 1.304469 5.62226139 root 1 Root_unresolved Root_unresolved 209 2.64e-64   NR XP_067772805.1 135588 g4940 i0 66.7 9.82830626450116 141 47 98.1 0 2 424 145 285 XP_067772805.1 UDP-glucose 4-epimerase GalE [Histomonas meleagridis] diamond 4236 211 0.990521327014218 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;