RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA897077" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA897077 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3424318 3424318 PRJNA897077_P_NODE_12423_length_281_cov_2.923077_g12296_i0 PRJNA897077 12423 281 2.923077 8.21384637 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 131 6.469999999999998e-35   NR PWV03856.1 5693 g12296 i0 71.3 31.1103202846975 94 26 99.3 1 281 3 39 132 PWV03856.1 putative heat shock protein 85 [Trypanosoma cruzi] diamond 8742 132 0.992424242424242 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
31287920 31287920 PRJNA897077_P_NODE_2675_length_586_cov_6.469786_g2548_i0 PRJNA897077 2675 586 6.469786 37.91294596 Leishmania tarentolae 5689 Euglenozoa other_Eukaryota 56.6 1.23e-5   NR GET91336.1 5689 g2548 i0 26.1 2.00170648464164 138 97 68.1 3 464 66 281 418 GET91336.1 N-myristoyl transferase [Leishmania tarentolae] diamond 1173 56.6 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania tarentolae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;