RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA896973" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA896973 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26707218 26707218 PRJNA896973_P_NODE_17601_length_274_cov_1.273632_g17507_i0 PRJNA896973 17601 274 1.273632 3.48975168 Dehalococcoides mccartyi 61435 Bacteria Bacteria 46.6 0.00236   NR WP_278533022.1 61435 g17507 i0 52.3 0.481751824817518 44 21 48.2 0 125 256 415 458 WP_278533022.1 Eco57I restriction-modification methylase domain-containing protein [Dehalococcoides mccartyi] diamond 132 46.6 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi
27498211 27498211 PRJNA896973_P_NODE_23483_length_248_cov_0.880000_g23389_i0 PRJNA896973 23483 248 0.88 2.1824 Herpetosiphonaceae bacterium 2720503 Bacteria Bacteria 112 3.28e-29   NR HZG68542.1 2720503 g23389 i0 70.7 1.98387096774194 82 20 99.2 1 247 2 107 184 HZG68542.1 IS630 family transposase [Herpetosiphonaceae bacterium] diamond 492 112 1 Bacteria   Bacillati Chloroflexota Chloroflexia Herpetosiphonales Herpetosiphonaceae   Herpetosiphonaceae bacterium
29329347 29329347 PRJNA896973_S_NODE_149_length_1011_cov_3.554371_g143_i0 PRJNA896973 149 1011 3.554371 35.93469081 Anaerolineae bacterium 2052143 Bacteria Bacteria 331 3.9999999999999996e-110   NR MCL6509824.1 2052143 g143 i0 79.2 1.22848664688427 207 43 61.4 0 704 84 50 256 MCL6509824.1 conjugal transfer protein TraL [Anaerolineae bacterium] diamond 1242 331 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
31192785 31192785 PRJNA896973_P_NODE_12495_length_315_cov_0.772727_g12401_i0 PRJNA896973 12495 315 0.772727 2.43409005 SAR202 cluster bacterium 2030829 Bacteria Bacteria 43.1 0.0348   NR MDP6422530.1 2030829 g12401 i0 39.3 0.533333333333333 56 33 53.3 1 256 89 111 165 MDP6422530.1 hypothetical protein [SAR202 cluster bacterium] diamond 168 43.1 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;