RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA896973" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA896973 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1244026 1244026 PRJNA896973_S_NODE_141_length_1030_cov_4.109718_g135_i0 PRJNA896973 141 1030 4.109718 42.3300954 Deinococcus sp. RM 2316359 Bacteria Bacteria 530 6.719999999999999e-185   NR WP_119674972.1 2316359 g135 i0 97.8 0.803883495145631 276 4 79.8 1 187 1008 1 276 WP_119674972.1 diguanylate cyclase domain-containing protein [Deinococcus sp. RM] diamond 828 530 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. RM
26929184 26929184 PRJNA896973_P_NODE_26282_length_244_cov_0.900585_g26188_i0 PRJNA896973 26282 244 0.900585 2.1974274 Trueperaceae bacterium 2026798 Bacteria Bacteria 138 8.209999999999999e-37   NR HEX7000611.1 2026798 g26188 i0 90.1 0.995901639344262 81 8 99.6 0 2 244 248 328 HEX7000611.1 folylpolyglutamate synthase/dihydrofolate synthase family protein [Trueperaceae bacterium] diamond 243 138 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
29676356 29676356 PRJNA896973_P_NODE_14390_length_297_cov_1.102679_g14296_i0 PRJNA896973 14390 297 1.102679 3.27495663 Meiothermus hypogaeus 884155 Bacteria Bacteria 43.1 0.0401   NR WP_119342060.1 884155 g14296 i0 34.2 0.737373737373737 73 42 67.7 1 33 233 2 74 WP_119342060.1 lysophospholipid acyltransferase family protein [Meiothermus hypogaeus] diamond 219 43.1 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus hypogaeus
31161213 31161213 PRJNA896973_S_NODE_1575_length_308_cov_2.838298_g1561_i0 PRJNA896973 1575 308 2.838298 8.74195784 Deinococcus radiotolerans 1309407 Bacteria Bacteria 99.8 1.51e-24   NR WP_189070423.1 1309407 g1561 i0 82 0.594155844155844 61 11 59.4 0 126 308 1 61 WP_189070423.1 ArsR/SmtB family transcription factor [Deinococcus radiotolerans] diamond 183 99.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiotolerans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;