RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA896973" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA896973 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12351916 12351916 PRJNA896973_P_NODE_1190_length_846_cov_3.155239_g1113_i0 PRJNA896973 1190 846 3.155239 26.69332194 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 249 1.27e-78   NR KAJ9456670.1 91374 g1113 i0 49.6 0.921985815602837 260 125 90.4 3 817 53 1 259 KAJ9456670.1 Elongation of fatty acids protein 3 [Diplonema papillatum] diamond 780 249 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
27687933 27687933 PRJNA896973_P_NODE_5724_length_439_cov_2.174863_g5630_i0 PRJNA896973 5724 439 2.174863 9.54764857 Euglena gracilis 3039 Euglenozoa other_Eukaryota 275 4.909999999999999e-89   NR Q9SWQ9.1 3039 g5630 i0 89 0.997722095671982 146 16 99.8 0 1 438 37 182 Q9SWQ9.1 RecName: Full=Delta(8)-fatty-acid desaturase; Short=EFD1; AltName: Full=Acyl-lipid (11-3)-desaturase; AltName: Full=Delta(8)-sphingolipid desaturase [Euglena gracilis] diamond 438 275 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis
32142172 32142172 PRJNA896973_P_NODE_25338_length_245_cov_0.895349_g25244_i0 PRJNA896973 25338 245 0.895349 2.19360505 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 125 2.8099999999999998e-34   NR XP_002669016.1 5762 g25244 i0 71.6 0.991836734693878 81 23 99.2 0 245 3 59 139 XP_002669016.1 uncharacterized protein NAEGRDRAFT_76010 [Naegleria gruberi] diamond 243 125 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;