RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA896973" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA896973 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28855609 28855609 PRJNA896973_S_NODE_808_length_408_cov_2.800000_g794_i0 PRJNA896973 808 408 2.8 11.424 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 78.6 6.47e-14   NR PRP77133.1 1890364 g794 i0 62.5 0.411764705882353 56 20 41.2 1 206 39 116 170 PRP77133.1 hypothetical protein PROFUN_14547 [Planoprotostelium fungivorum] diamond 168 78.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
30592742 30592742 PRJNA896973_P_NODE_22533_length_250_cov_0.870056_g22439_i0 PRJNA896973 22533 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 73.6 4.16e-13   NR XP_004339311.1 1257118 g22439 i0 79.1 0.516 43 9 51.6 0 116 244 306 348 XP_004339311.1 carbonate dehydratase, putative [Acanthamoeba castellanii str. Neff] diamond 129 73.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;