RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA896758" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA896758 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7251013 7251013 PRJNA896758_P_NODE_3846_length_586_cov_1.317739_g3464_i0 PRJNA896758 3846 586 1.317739 7.72195054 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 236 2.89e-75   NR XP_013754328.1 461836 g3464 i0 70.3 8.31911262798635 165 49 84.5 0 92 586 44 208 XP_013754328.1 60S ribosomal protein L7 [Thecamonas trahens ATCC 50062] diamond 4875 236 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27277062 27277062 PRJNA896758_P_NODE_20143_length_258_cov_2.021622_g19753_i0 PRJNA896758 20143 258 2.021622 5.21578476 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 53.5 7.22e-6   NR XP_013754144.1 461836 g19753 i0 38.7 2.02325581395349 93 47 96.5 3 251 3 1782 1874 XP_013754144.1 ubiquitin carboxyl-terminal hydrolase 34 [Thecamonas trahens ATCC 50062] diamond 522 53.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29644688 29644688 PRJNA896758_P_NODE_12910_length_320_cov_1.246964_g12520_i0 PRJNA896758 12910 320 1.246964 3.9902848 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 43.5 0.0485   NR XP_013759876.1 461836 g12520 i0 60.7 0.2625 28 11 26.3 0 318 235 34 61 XP_013759876.1 uncharacterized protein AMSG_03524 [Thecamonas trahens ATCC 50062] diamond 84 43.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31382991 31382991 PRJNA896758_P_NODE_12096_length_331_cov_1.186047_g11706_i0 PRJNA896758 12096 331 1.186047 3.92581557 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 57.8 4.22e-7   NR XP_013759479.1 461836 g11706 i0 51.5 0.598187311178248 66 29 57.1 2 5 193 1 66 XP_013759479.1 uncharacterized protein AMSG_02572 [Thecamonas trahens ATCC 50062] diamond 198 57.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;