RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA893346" and tax_phylum = "Planctomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA893346 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18719726 18719726 PRJNA893346_P_NODE_29275_length_276_cov_1.477833_g28785_i0 PRJNA893346 29275 276 1.477833 4.07881908 Gemmataceae bacterium 2052164 Bacteria Bacteria 129 5.709999999999999e-34   NR HZZ81531.1 2052164 g28785 i0 63.3 3.8804347826087 90 33 97.8 0 274 5 221 310 HZZ81531.1 phosphoglycerate kinase [Gemmataceae bacterium] diamond 1071 129 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
31699142 31699142 PRJNA893346_P_NODE_32577_length_255_cov_1.269231_g32087_i0 PRJNA893346 32577 255 1.269231 3.23653905 Planctomycetota bacterium 2026780 Bacteria Bacteria 103 7.4e-24   NR GDY13910.1 2026780 g32087 i0 62.4 1 85 32 100 0 1 255 261 345 GDY13910.1 hypothetical protein LBMAG53_27880 [Planctomycetota bacterium] diamond 255 103 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
31699150 31699150 PRJNA893346_P_NODE_5517_length_690_cov_1.416532_g5057_i0 PRJNA893346 5517 690 1.416532 9.7740708 Planctomycetota bacterium 2026780 Bacteria Bacteria 68.2 3.97e-9   NR MBC8354889.1 2026780 g5057 i0 28.7 2.36521739130435 188 115 77 6 156 686 174 353 MBC8354889.1 DUF11 domain-containing protein [Planctomycetota bacterium] diamond 1632 68.2 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;