RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA893346" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA893346 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
868278 868278 PRJNA893346_P_NODE_28481_length_281_cov_1.475962_g27991_i0 PRJNA893346 28481 281 1.475962 4.14745322 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 142 4.22e-39   NR XP_002774056.1 423536 g27991 i0 75 0.939501779359431 88 22 94 0 270 7 166 253 XP_002774056.1 conserved hypothetical protein [Perkinsus marinus ATCC 50983] diamond 264 142 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
29905577 29905577 PRJNA893346_P_NODE_40031_length_241_cov_0.916667_g39541_i0 PRJNA893346 40031 241 0.916667 2.20916747 root 1 Root_unresolved Root_unresolved 120 1.18e-29   NR KAF4672029.1 32597 g39541 i0 84.1 20.6141078838174 69 11 85.9 0 239 33 179 247 KAF4672029.1 hypothetical protein FOL46_009576 [Perkinsus olseni] diamond 4968 121 0.991735537190083 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;