RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA891846" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA891846 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28066266 28066266 PRJNA891846_P_NODE_33625_length_264_cov_0.764398_g33406_i0 PRJNA891846 33625 264 0.764398 2.01801072 Myxococcota bacterium 2818507 Bacteria Bacteria 47 0.00155   NR MFC1654717.1 2818507 g33406 i0 38.1 0.715909090909091 63 30 71.6 2 8 196 856 909 MFC1654717.1 Dickkopf N-terminal cysteine-rich domain-containing protein [Myxococcota bacterium] diamond 189 47 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30213419 30213419 PRJNA891846_P_NODE_42512_length_246_cov_0.890173_g42292_i0 PRJNA891846 42512 246 0.890173 2.18982558 Myxococcales bacterium 2026763 Bacteria Bacteria 111 1.3e-26   NR MBR59353.1 2026763 g42292 i0 66.7 1.96341463414634 81 27 98.8 0 3 245 253 333 MBR59353.1 peptidase M17 [Myxococcales bacterium] diamond 483 111 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30695227 30695227 PRJNA891846_P_NODE_22413_length_322_cov_1.542169_g22194_i0 PRJNA891846 22413 322 1.542169 4.96578418 Bacteria 2 Bacteria Bacteria 53.5 1.05e-5   NR MCB2185331.1 2026735 g22194 i0 32 1.95652173913043 75 45 64.3 2 322 116 64 138 MCB2185331.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 630 53.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;