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contig_metadata

21 rows where analysis = "diamond", bioproject = "PRJNA891846" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA891846 · 21 ✖

analysis 1

  • diamond · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1243012 1243012 PRJNA891846_P_NODE_13241_length_416_cov_0.897959_g13022_i0 PRJNA891846 13241 416 0.897959 3.73550944 Actinomycetota bacterium 2900548 Bacteria Bacteria 231 3.54e-75   NR NCZ58376.1 2900548 g13022 i0 99.2 0.865384615384615 120 1 86.5 0 360 1 1 120 NCZ58376.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR [Actinomycetota bacterium] diamond 360 231 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
4695944 4695944 PRJNA891846_P_NODE_45524_length_243_cov_0.905882_g45304_i0 PRJNA891846 45524 243 0.905882 2.20129326 Actinomycetota bacterium 2900548 Bacteria Bacteria 122 2.58e-32   NR NBP49988.1 2900548 g45304 i0 95.5 0.827160493827161 67 3 82.7 0 241 41 189 255 NBP49988.1 electron transfer flavoprotein beta subunit/FixA family protein [Actinomycetota bacterium] diamond 201 122 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
13620982 13620982 PRJNA891846_P_NODE_37691_length_250_cov_0.870056_g37471_i0 PRJNA891846 37691 250 0.870056 2.17514 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 150 4.68e-43   NR MFM8266324.1 2080302 g37471 i0 92.7 0.984 82 3 98.4 1 3 248 148 226 MFM8266324.1 AMP-binding protein [Acidimicrobiia bacterium] diamond 246 150 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
16170325 16170325 PRJNA891846_P_NODE_8153_length_517_cov_0.968468_g7938_i0 PRJNA891846 8153 517 0.968468 5.00697956 root 1 Root_unresolved Root_unresolved 166 7.379999999999999e-47   NR MES6521686.1 1747 g7938 i0 66.7 8.35589941972921 120 40 69.6 0 363 4 51 170 MES6521686.1 reverse transcriptase family protein [Cutibacterium acnes] diamond 4320 166 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
17820696 17820696 PRJNA891846_P_NODE_44434_length_244_cov_0.900585_g44214_i0 PRJNA891846 44434 244 0.900585 2.1974274 Actinomycetota bacterium 2900548 Bacteria Bacteria 159 1.4699999999999999e-43   NR MEN9758324.1 2900548 g44214 i0 98.8 4.91803278688525 80 1 98.4 0 242 3 271 350 MEN9758324.1 hypothetical protein [Actinomycetota bacterium] diamond 1200 159 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
23819454 23819454 PRJNA891846_P_NODE_36859_length_251_cov_0.865169_g36639_i0 PRJNA891846 36859 251 0.865169 2.17157419 Actinomycetota bacterium 2900548 Bacteria Bacteria 147 7.369999999999999e-43   NR MEY4226318.1 2900548 g36639 i0 92.3 0.932270916334661 78 6 93.2 0 251 18 111 188 MEY4226318.1 hypothetical protein [Actinomycetota bacterium] diamond 234 147 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
25093423 25093423 PRJNA891846_P_NODE_41860_length_246_cov_0.890173_g41640_i0 PRJNA891846 41860 246 0.890173 2.18982558 Bacteria 2 Bacteria Bacteria 159 3.55e-45   NR TEX51193.1 1962179 g41640 i0 96.3 2.96341463414634 81 3 98.8 0 245 3 148 228 TEX51193.1 MAG: cysteine desulfurase NifS [Actinomycetales bacterium mxb001] diamond 729 160 0.99375 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales     Actinomycetales bacterium mxb001
26675412 26675412 PRJNA891846_P_NODE_17301_length_365_cov_1.332192_g17082_i0 PRJNA891846 17301 365 1.332192 4.8625008 Myceligenerans indicum 2593663 Bacteria Bacteria 43.9 0.0236   NR WP_201851174.1 2593663 g17082 i0 42.9 0.517808219178082 63 32 51.8 2 360 172 94 152 WP_201851174.1 VapA/VapB family virulence-associated protein [Myceligenerans indicum] diamond 189 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Promicromonosporaceae Myceligenerans Myceligenerans indicum
26707105 26707105 PRJNA891846_P_NODE_39861_length_248_cov_0.880000_g39641_i0 PRJNA891846 39861 248 0.88 2.1824 Actinomycetes bacterium 1883427 Bacteria Bacteria 137 5.469999999999999e-37   NR MFN7802175.1 1883427 g39641 i0 74.4 0.991935483870968 82 21 99.2 0 248 3 141 222 MFN7802175.1 transketolase [Actinomycetes bacterium] diamond 246 137 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
27118567 27118567 PRJNA891846_P_NODE_47602_length_241_cov_0.916667_g47382_i0 PRJNA891846 47602 241 0.916667 2.20916747 Candidatus Nanopelagicaceae bacterium 2518609 Bacteria Bacteria 164 3.72e-48   NR MBU3753199.1 2518609 g47382 i0 97.5 0.983402489626556 79 2 98.3 0 3 239 25 103 MBU3753199.1 threonylcarbamoyl-AMP synthase [Candidatus Nanopelagicaceae bacterium] diamond 237 164 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales Candidatus Nanopelagicaceae   Candidatus Nanopelagicaceae bacterium
27435058 27435058 PRJNA891846_P_NODE_28703_length_285_cov_1.325472_g28484_i0 PRJNA891846 28703 285 1.325472 3.7775952 Nocardia sp. NPDC 1821 Bacteria Bacteria 46.2 0.00343   NR WP_379430397.1 3346777 g28484 i0 34.4 0.642105263157895 61 33 56.8 1 275 114 288 348 WP_379430397.1 hypothetical protein [Nocardia sp. NPDC059228] diamond 183 46.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia sp. NPDC059228
27442900 27442900 PRJNA891846_P_NODE_36943_length_251_cov_0.865169_g36723_i0 PRJNA891846 36943 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 169 9.91e-51   NR KRO43633.1 1655569 g36723 i0 98.8 4.9601593625498 83 1 99.2 0 1 249 29 111 KRO43633.1 MAG: 6-phosphofructokinase, partial [Actinobacteria bacterium BACL2 MAG-120813-bin23] diamond 1245 170 0.994117647058824 Bacteria ac1 cluster Bacillati Actinomycetota Actinomycetes       Actinobacteria bacterium BACL2 MAG-120813-bin23
28192375 28192375 PRJNA891846_P_NODE_47546_length_241_cov_0.916667_g47326_i0 PRJNA891846 47546 241 0.916667 2.20916747 Actinomycetota bacterium 2900548 Bacteria Bacteria 173 2.06e-49   NR MCX6417527.1 2900548 g47326 i0 100 1.99170124481328 80 0 99.6 0 1 240 289 368 MCX6417527.1 urocanate hydratase [Actinomycetota bacterium] diamond 480 173 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29210925 29210925 PRJNA891846_P_NODE_47429_length_241_cov_0.916667_g47209_i0 PRJNA891846 47429 241 0.916667 2.20916747 Bacteria 2 Bacteria Bacteria 144 3.12e-40   NR MFM8521170.1 2024894 g47209 i0 100 5.30290456431535 71 0 88.4 0 1 213 261 331 MFM8521170.1 M18 family aminopeptidase [Acidimicrobiaceae bacterium] diamond 1278 144 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Acidimicrobiaceae   Acidimicrobiaceae bacterium
29834460 29834460 PRJNA891846_P_NODE_43451_length_245_cov_0.895349_g43231_i0 PRJNA891846 43451 245 0.895349 2.19360505 Actinomycetales bacterium 1911520 Bacteria Bacteria 164 1.88e-49   NR MBU6255610.1 1911520 g43231 i0 100 0.991836734693878 81 0 99.2 0 1 243 84 164 MBU6255610.1 copper resistance protein CopC [Actinomycetales bacterium] diamond 243 164 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales     Actinomycetales bacterium
30442664 30442664 PRJNA891846_P_NODE_36753_length_251_cov_0.865169_g36533_i0 PRJNA891846 36753 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 131 7.93e-34   NR MCE2854875.1 2497619 g36533 i0 86.4 1.9601593625498 81 11 96.8 0 1 243 56 136 MCE2854875.1 YifB family Mg chelatase-like AAA ATPase [Ilumatobacteraceae bacterium] diamond 492 131 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium
30971984 30971984 PRJNA891846_P_NODE_41954_length_246_cov_0.890173_g41734_i0 PRJNA891846 41954 246 0.890173 2.18982558 Actinomycetota bacterium 2900548 Bacteria Bacteria 64.3 3.45e-10   NR MEY2763277.1 2900548 g41734 i0 40.7 3.13414634146341 86 47 100 1 1 246 50 135 MEY2763277.1 hypothetical protein [Actinomycetota bacterium] diamond 771 64.3 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31168999 31168999 PRJNA891846_P_NODE_38955_length_249_cov_0.875000_g38735_i0 PRJNA891846 38955 249 0.875 2.17875 Bacteria 2 Bacteria Bacteria 159 1.08e-43   NR MBU6164157.1 1911520 g38735 i0 100 3.95180722891566 82 0 98.8 0 247 2 32 113 MBU6164157.1 penicillin-binding protein [Actinomycetales bacterium] diamond 984 159 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales     Actinomycetales bacterium
31319480 31319480 PRJNA891846_P_NODE_44115_length_244_cov_0.900585_g43895_i0 PRJNA891846 44115 244 0.900585 2.1974274 Actinomycetota bacterium 2900548 Bacteria Bacteria 134 6.19e-35   NR MEY3257042.1 2900548 g43895 i0 94 0.823770491803279 67 4 82.4 0 6 206 424 490 MEY3257042.1 hypothetical protein [Actinomycetota bacterium] diamond 201 134 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31319483 31319483 PRJNA891846_P_NODE_5295_length_630_cov_1.486535_g5085_i0 PRJNA891846 5295 630 1.486535 9.3651705 Patulibacter sp. 1912859 Bacteria Bacteria 49.3 0.00456   NR MFA4930227.1 1912859 g5085 i0 57.6 0.157142857142857 33 14 15.7 0 425 327 235 267 MFA4930227.1 hypothetical protein [Patulibacter sp.] diamond 99 49.3 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Patulibacteraceae Patulibacter Patulibacter sp.
32300563 32300563 PRJNA891846_P_NODE_36639_length_251_cov_0.865169_g36419_i0 PRJNA891846 36639 251 0.865169 2.17157419 Actinomycetes bacterium 1883427 Bacteria Bacteria 160 7.72e-46   NR GDX18301.1 1883427 g36419 i0 98.8 0.99203187250996006 83 1 99.2 0 251 3 115 197 GDX18301.1 AI-2E family transporter [Actinomycetes bacterium] diamond 249 160 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;