RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA890871" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA890871 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28223962 28223962 PRJNA890871_P_NODE_87086_length_240_cov_2.694611_g86951_i0 PRJNA890871 87086 240 2.694611 6.4670664 Mycoplasmopsis arginini 2094 Bacteria Bacteria 46.6 8.68e-4   NR MDI3352151.1 2094 g86951 i0 95 0.25 20 1 25 0 130 189 8 27 MDI3352151.1 hypothetical protein [Mycoplasmopsis arginini] diamond 60 46.6 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
30277091 30277091 PRJNA890871_P_NODE_79992_length_243_cov_2.347059_g79857_i0 PRJNA890871 79992 243 2.347059 5.70335337 Mycoplasmopsis arginini 2094 Bacteria Bacteria 56.2 1.98e-7   NR MDI3349153.1 2094 g79857 i0 79.3 0.358024691358025 29 6 35.8 0 118 32 11 39 MDI3349153.1 hypothetical protein [Mycoplasmopsis arginini] diamond 87 56.2 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
30687335 30687335 PRJNA890871_P_NODE_2893_length_919_cov_3.466903_g2772_i0 PRJNA890871 2893 919 3.466903 31.86083857 Candidatus Ureaplasma intestinipullorum 2838770 Bacteria Bacteria 65.5 1.04e-7   NR MBU3831078.1 2838770 g2772 i0 29.2 1.32208922742111 137 90 42.4 4 917 528 751 887 MBU3831078.1 isoleucine--tRNA ligase [Candidatus Ureaplasma intestinipullorum] diamond 1215 65.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Candidatus Ureaplasma intestinipullorum
30845494 30845494 PRJNA890871_P_NODE_3254_length_852_cov_3.632863_g3128_i0 PRJNA890871 3254 852 3.632863 30.95199276 Candidatus Izemoplasmatales bacterium 3018265 Bacteria Bacteria 162 7.47e-41   NR MFA7106457.1 3018265 g3128 i0 38.8 4.70774647887324 291 156 98.9 7 6 848 717 995 MFA7106457.1 DEAD/DEAH box helicase family protein [Candidatus Izemoplasmatales bacterium] diamond 4011 162 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales     Candidatus Izemoplasmatales bacterium
31509436 31509436 PRJNA890871_P_NODE_19596_length_368_cov_1.586441_g19461_i0 PRJNA890871 19596 368 1.586441 5.83810288 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 158 3.46e-46   NR QWB95836.1 2231116 g19461 i0 62.8 3.95380434782609 121 42 96.2 3 356 3 83 203 QWB95836.1 uracil-DNA glycosylase [Mycoplasmatota bacterium] diamond 1455 158 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;