RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA890871" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA890871 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10170929 10170929 PRJNA890871_P_NODE_2668_length_970_cov_3.442586_g2547_i0 PRJNA890871 2668 970 3.442586 33.3930842 Pseudomonadati 3379134 Bacteria Bacteria 298 1.3499999999999999e-95   NR WP_274311996.1 1111041 g2547 i0 70.9 19.7505154639175 206 55 63.7 1 351 968 1 201 WP_274311996.1 class Ia ribonucleoside-diphosphate reductase subunit beta [Lentisphaera marina] diamond 19158 301 0.990033222591362 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae Lentisphaera Lentisphaera marina
30055393 30055393 PRJNA890871_P_NODE_27571_length_321_cov_1.701613_g27436_i0 PRJNA890871 27571 321 1.701613 5.46217773 Lentisphaeria bacterium 2053569 Bacteria Bacteria 133 7.519999999999998e-35   NR MFT5084039.1 2053569 g27436 i0 64.5 12 107 38 100 0 1 321 102 208 MFT5084039.1 type IV pilus assembly protein PilC [Lentisphaeria bacterium] diamond 3852 133 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;