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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA890871" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 32 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA890871 · 32 ✖

analysis 1

  • diamond · 32 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26643890 26643890 PRJNA890871_P_NODE_74541_length_246_cov_0.890173_g74406_i0 PRJNA890871 74541 246 0.890173 2.18982558 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 55.1 1.52e-6   NR CAI9690869.1 3082113 g74406 i0 86.7 0.365853658536585 30 4 36.6 0 1 90 9 38 CAI9690869.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 90 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
26770717 26770717 PRJNA890871_P_NODE_63461_length_251_cov_0.865169_g63326_i0 PRJNA890871 63461 251 0.865169 2.17157419 Ochotona princeps 9978 Chordata Chordata 59.3 5.86e-8   NR XP_058510879.1 9978 g63326 i0 49.1 0.657370517928287 55 28 65.7 0 242 78 87 141 XP_058510879.1 nuclear respiratory factor 1 isoform X2 [Ochotona princeps] diamond 165 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Ochotonidae Ochotona Ochotona princeps
26802276 26802276 PRJNA890871_P_NODE_40141_length_282_cov_1.315789_g40006_i0 PRJNA890871 40141 282 1.315789 3.71052498 Oryctolagus cuniculus 9986 Chordata Chordata 57.8 3.21e-7   NR XP_069928590.1 9986 g40006 i0 58.3 1.02127659574468 48 20 51.1 0 34 177 293 340 XP_069928590.1 inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 isoform X1 [Oryctolagus cuniculus] diamond 288 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
26960454 26960454 PRJNA890871_P_NODE_81162_length_243_cov_0.905882_g81027_i0 PRJNA890871 81162 243 0.905882 2.20129326 Dasypus novemcinctus 9361 Chordata Chordata 85.9 1.14e-19   NR XP_071067971.1 9361 g81027 i0 54.7 1.88888888888889 75 32 91.4 2 227 6 30 103 XP_071067971.1 small ribosomal subunit protein uS8-like [Dasypus novemcinctus] diamond 459 85.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Cingulata Dasypodidae Dasypus Dasypus novemcinctus
27118529 27118529 PRJNA890871_P_NODE_70502_length_248_cov_0.880000_g70367_i0 PRJNA890871 70502 248 0.88 2.1824 Oryctolagus cuniculus 9986 Chordata Chordata 92.4 1.31e-19   NR XP_069928590.1 9986 g70367 i0 59 2.83064516129032 78 31 93.1 1 243 13 420 497 XP_069928590.1 inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 isoform X1 [Oryctolagus cuniculus] diamond 702 92.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
27213412 27213412 PRJNA890871_P_NODE_77622_length_244_cov_2.473684_g77487_i0 PRJNA890871 77622 244 2.473684 6.03578896 Oryctolagus cuniculus 9986 Chordata Chordata 42.7 0.0378   NR XP_069922831.1 9986 g77487 i0 46.9 0.602459016393443 49 23 56.6 2 70 207 425 473 XP_069922831.1 histo-blood group ABO system transferase-like isoform X1 [Oryctolagus cuniculus] diamond 147 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
27466527 27466527 PRJNA890871_P_NODE_81043_length_243_cov_0.905882_g80908_i0 PRJNA890871 81043 243 0.905882 2.20129326 Oryctolagus cuniculus 9986 Chordata Chordata 63.5 2.46e-10   NR XP_069913239.1 9986 g80908 i0 66.7 1.88888888888889 51 17 63 0 91 243 8 58 XP_069913239.1 protein GVQW3-like [Oryctolagus cuniculus] diamond 459 63.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
27750769 27750769 PRJNA890871_P_NODE_83644_length_242_cov_0.911243_g83509_i0 PRJNA890871 83644 242 0.911243 2.20520806 Phyllostomus discolor 89673 Chordata Chordata 45.1 0.00202   NR KAF6125277.1 89673 g83509 i0 38.8 0.991735537190083 80 47 96.7 1 3 236 55 134 KAF6125277.1 hypothetical protein HJG60_009796 [Phyllostomus discolor] diamond 240 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
27813941 27813941 PRJNA890871_P_NODE_78664_length_244_cov_0.900585_g78529_i0 PRJNA890871 78664 244 0.900585 2.1974274 Eschrichtius robustus 9764 Chordata Chordata 43.9 0.0111   NR XP_068418559.1 9764 g78529 i0 34.2 0.897540983606557 73 47 88.5 1 243 28 69 141 XP_068418559.1 LOW QUALITY PROTEIN: LINE-1 type transposase domain-containing protein 1 [Eschrichtius robustus] diamond 219 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
27876808 27876808 PRJNA890871_P_NODE_66605_length_249_cov_2.107955_g66470_i0 PRJNA890871 66605 249 2.107955 5.24880795 Eschrichtius robustus 9764 Chordata Chordata 63.9 3.85e-10   NR KAJ8797551.1 9764 g66470 i0 43.5 1.02409638554217 85 45 98.8 1 1 246 35 119 KAJ8797551.1 hypothetical protein J1605_017283 [Eschrichtius robustus] diamond 255 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
27940064 27940064 PRJNA890871_P_NODE_44985_length_274_cov_1.328358_g44850_i0 PRJNA890871 44985 274 1.328358 3.63970092 Podomys floridanus 56323 Chordata Chordata 43.5 0.0275   NR YP_009414165.1 56323 g44850 i0 51 0.536496350364963 49 23 52.6 1 212 69 246 294 YP_009414165.1 NADH dehydrogenase subunit 4 [Podomys floridanus] diamond 147 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Podomys Podomys floridanus
27940068 27940068 PRJNA890871_P_NODE_49365_length_267_cov_2.365979_g49230_i0 PRJNA890871 49365 267 2.365979 6.31716393 Oryctolagus cuniculus 9986 Chordata Chordata 72.8 1.38e-12   NR XP_069928590.1 9986 g49230 i0 58.5 11.3595505617978 65 27 73 0 195 1 697 761 XP_069928590.1 inactive N-acetylated-alpha-linked acidic dipeptidase-like protein 2 isoform X1 [Oryctolagus cuniculus] diamond 3033 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
27940076 27940076 PRJNA890871_P_NODE_68685_length_248_cov_2.640000_g68550_i0 PRJNA890871 68685 248 2.64 6.5472 Physeter macrocephalus 9755 Chordata Chordata 61.2 1.18e-8   NR XP_023985464.2 9755 g68550 i0 80.5 0.991935483870968 41 8 49.6 0 82 204 79 119 XP_023985464.2 alpha/beta hydrolase domain-containing protein 17C isoform X2 [Physeter macrocephalus] diamond 246 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
27971514 27971514 PRJNA890871_P_NODE_78265_length_244_cov_1.450292_g78130_i0 PRJNA890871 78265 244 1.450292 3.53871248 Rousettus aegyptiacus 9407 Chordata Chordata 49.7 4.43e-5   NR KAF6466032.1 9407 g78130 i0 45.8 0.590163934426229 48 24 56.6 1 43 180 1 48 KAF6466032.1 hypothetical protein HJG63_011362 [Rousettus aegyptiacus] diamond 144 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
28318813 28318813 PRJNA890871_P_NODE_37606_length_287_cov_1.200935_g37471_i0 PRJNA890871 37606 287 1.200935 3.44668345 Lepus europaeus 9983 Chordata Chordata 47.4 0.0013   NR XP_062054884.1 9983 g37471 i0 53.7 0.428571428571429 41 19 42.9 0 20 142 195 235 XP_062054884.1 uncharacterized protein LOC133765283 [Lepus europaeus] diamond 123 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Lepus Lepus europaeus
28445336 28445336 PRJNA890871_P_NODE_83886_length_242_cov_0.911243_g83751_i0 PRJNA890871 83886 242 0.911243 2.20520806 Oryctolagus cuniculus 9986 Chordata Chordata 49.3 1.85e-4   NR XP_069922617.1 9986 g83751 i0 46.9 0.793388429752066 64 30 75.6 3 57 239 461 523 XP_069922617.1 THO complex subunit 2 isoform X5 [Oryctolagus cuniculus] diamond 192 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
28476742 28476742 PRJNA890871_P_NODE_63506_length_251_cov_0.865169_g63371_i0 PRJNA890871 63506 251 0.865169 2.17157419 Oryctolagus cuniculus 9986 Chordata Chordata 66.2 2.2e-10   NR XP_069906595.1 9986 g63371 i0 43.2 2.65338645418327 74 40 88.4 1 251 30 452 523 XP_069906595.1 LOW QUALITY PROTEIN: LINE-1 retrotransposable element ORF2 protein [Oryctolagus cuniculus] diamond 666 66.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
28540127 28540127 PRJNA890871_P_NODE_82007_length_243_cov_0.905882_g81872_i0 PRJNA890871 82007 243 0.905882 2.20129326 Sousa chinensis 103600 Chordata Chordata 54.3 1.91e-7   NR TEA41730.1 103600 g81872 i0 38.4 0.901234567901235 73 40 90.1 1 240 22 13 80 TEA41730.1 hypothetical protein DBR06_SOUSAS26310009, partial [Sousa chinensis] diamond 219 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Sousa Sousa chinensis
28634857 28634857 PRJNA890871_P_NODE_67667_length_249_cov_0.875000_g67532_i0 PRJNA890871 67667 249 0.875 2.17875 Oryctolagus cuniculus 9986 Chordata Chordata 54.3 3.4e-6   NR XP_069906595.1 9986 g67532 i0 47.8 1.66265060240964 69 31 81.9 2 217 14 451 515 XP_069906595.1 LOW QUALITY PROTEIN: LINE-1 retrotransposable element ORF2 protein [Oryctolagus cuniculus] diamond 414 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
29084576 29084576 PRJNA890871_P_NODE_65128_length_250_cov_0.870056_g64993_i0 PRJNA890871 65128 250 0.870056 2.17514 Chiroptera 9397 Chordata Chordata 55.5 3.16e-7   NR KAF6457032.1 9407 g64993 i0 51.8 1.596 56 22 62.4 2 20 175 72 126 KAF6457032.1 hypothetical protein HJG63_011628 [Rousettus aegyptiacus] diamond 399 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
29305388 29305388 PRJNA890871_P_NODE_63649_length_251_cov_0.865169_g63514_i0 PRJNA890871 63649 251 0.865169 2.17157419 Equus 9789 Chordata Chordata 49.7 1.45e-4   NR XP_070132068.1 9796 g63514 i0 44.9 1.85258964143426 49 27 58.6 0 213 67 141 189 XP_070132068.1 clathrin heavy chain 2 isoform X1 [Equus caballus] diamond 465 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Equidae Equus Equus caballus
29329194 29329194 PRJNA890871_P_NODE_85669_length_241_cov_0.916667_g85534_i0 PRJNA890871 85669 241 0.916667 2.20916747 Hippopotamus amphibius kiboko 575201 Chordata Chordata 53.9 3.99e-6   NR XP_057567898.1 575201 g85534 i0 54.9 0.634854771784232 51 22 62.2 1 2 151 282 332 XP_057567898.1 actin maturation protease isoform X1 [Hippopotamus amphibius kiboko] diamond 153 53.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Hippopotamidae Hippopotamus Hippopotamus amphibius
29360853 29360853 PRJNA890871_P_NODE_46689_length_271_cov_1.939394_g46554_i0 PRJNA890871 46689 271 1.939394 5.25575774 Capra hircus 9925 Chordata Chordata 89 2.95e-18   NR XDB62034.1 9925 g46554 i0 78.7 0.675276752767528 61 12 66.4 1 181 2 563 623 XDB62034.1 hypothetical protein ABFV05_015650 [Capra hircus] diamond 183 89 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
29423750 29423750 PRJNA890871_P_NODE_74889_length_246_cov_0.890173_g74754_i0 PRJNA890871 74889 246 0.890173 2.18982558 Oryctolagus cuniculus 9986 Chordata Chordata 68.9 2.21e-11   NR XP_069903775.1 9986 g74754 i0 46 2.32926829268293 63 34 76.8 0 224 36 448 510 XP_069903775.1 LINE-1 retrotransposable element ORF2 protein [Oryctolagus cuniculus] diamond 573 68.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
29802784 29802784 PRJNA890871_P_NODE_81931_length_243_cov_0.905882_g81796_i0 PRJNA890871 81931 243 0.905882 2.20129326 Balaenoptera musculus 9771 Chordata Chordata 46.6 0.00157   NR XP_036730134.1 9771 g81796 i0 87.1 0.382716049382716 31 4 38.3 0 140 232 342 372 XP_036730134.1 LOW QUALITY PROTEIN: heterogeneous nuclear ribonucleoprotein H-like [Balaenoptera musculus] diamond 93 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera musculus
30371932 30371932 PRJNA890871_P_NODE_76872_length_245_cov_0.895349_g76737_i0 PRJNA890871 76872 245 0.895349 2.19360505 Oryctolagus cuniculus 9986 Chordata Chordata 42.7 0.0384   NR XP_069903724.1 9986 g76737 i0 62.2 0.551020408163265 45 14 52.7 2 26 154 432 475 XP_069903724.1 ATPase family gene 2 protein homolog A isoform X9 [Oryctolagus cuniculus] diamond 135 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
30624108 30624108 PRJNA890871_P_NODE_75853_length_245_cov_1.610465_g75718_i0 PRJNA890871 75853 245 1.610465 3.94563925 Fukomys damarensis 885580 Chordata Chordata 45.1 0.00416   NR KFO37288.1 885580 g75718 i0 44.6 0.795918367346939 65 29 75.9 4 34 219 104 164 KFO37288.1 hypothetical protein H920_01270 [Fukomys damarensis] diamond 195 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Fukomys Fukomys damarensis
30948244 30948244 PRJNA890871_P_NODE_62574_length_251_cov_1.455056_g62439_i0 PRJNA890871 62574 251 1.455056 3.65219056 Physeteridae 9750 Chordata Chordata 43.9 0.0153   NR XP_054944521.1 9755 g62439 i0 52.9 0.812749003984064 34 16 40.6 0 26 127 273 306 XP_054944521.1 retinol dehydrogenase 11 isoform X2 [Physeter macrocephalus] diamond 204 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Physeteridae Physeter Physeter macrocephalus
31572721 31572721 PRJNA890871_P_NODE_81276_length_243_cov_0.905882_g81141_i0 PRJNA890871 81276 243 0.905882 2.20129326 Sousa chinensis 103600 Chordata Chordata 47.4 4.89e-5   NR TEA38419.1 103600 g81141 i0 56.4 1 39 17 48.1 0 150 34 5 43 TEA38419.1 hypothetical protein DBR06_SOUSAS110302, partial [Sousa chinensis] diamond 243 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Sousa Sousa chinensis
32078657 32078657 PRJNA890871_P_NODE_87918_length_238_cov_2.393939_g87783_i0 PRJNA890871 87918 238 2.393939 5.69757482 Oryctolagus cuniculus 9986 Chordata Chordata 58.2 1.3e-7   NR XP_017200283.2 9986 g87783 i0 46.3 0.84453781512605 67 36 84.5 0 232 32 613 679 XP_017200283.2 zinc finger protein 157 isoform X2 [Oryctolagus cuniculus] diamond 201 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
32592747 32592747 PRJNA890871_P_NODE_86019_length_241_cov_0.916667_g85884_i0 PRJNA890871 86019 241 0.916667 2.20916747 Mammalia 40674 Chordata Chordata 58.9 4.69e-8   NR KAF0882015.1 9678 g85884 i0 61.9 7.84232365145228 42 16 52.3 0 239 114 215 256 KAF0882015.1 LORF2 protein, partial [Crocuta crocuta] diamond 1890 58.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
32655265 32655265 PRJNA890871_P_NODE_64820_length_250_cov_1.497175_g64685_i0 PRJNA890871 64820 250 1.497175 3.7429375 Leporidae 9979 Chordata Chordata 55.1 1.83e-6   NR XP_062056702.1 9983 g64685 i0 52.6 1.98 57 27 68.4 0 50 220 23 79 XP_062056702.1 parathyroid hormone/parathyroid hormone-related peptide receptor isoform X3 [Lepus europaeus] diamond 495 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Lepus Lepus europaeus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;