RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA890871" and tax_kingdom = "Thermoproteati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermoproteati · 3 ✖

bioproject 1

  • PRJNA890871 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28358082 28358082 PRJNA890871_P_NODE_47786_length_270_cov_0.832487_g47651_i0 PRJNA890871 47786 270 0.832487 2.2477149 root 1 Root_unresolved Root_unresolved 112 2.29e-28   NR MDX1532620.1 2202732 g47651 i0 53.4 2.94444444444444 88 41 97.8 0 2 265 64 151 MDX1532620.1 tRNA(His) guanylyltransferase Thg1 family protein [Nitrosopumilaceae archaeon] diamond 795 113 0.991150442477876 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon
29494907 29494907 PRJNA890871_P_NODE_37130_length_287_cov_4.242991_g36995_i0 PRJNA890871 37130 287 4.242991 12.17738417 Stenosarchaea group 2290931 Archaea Archaea 45.4 9.91e-4   NR MEK0338457.1 2024843 g36995 i0 55.6 0.752613240418119 36 16 37.6 0 12 119 38 73 MEK0338457.1 hypothetical protein [Nitrosopumilus sp.] diamond 216 45.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
31864817 31864817 PRJNA890871_P_NODE_84737_length_241_cov_2.494048_g84602_i0 PRJNA890871 84737 241 2.494048 6.01065568 root 1 Root_unresolved Root_unresolved 88.6 5.63e-19   NR MFI5405737.1 2268197 g84602 i0 75.9 2.29045643153527 54 13 67.2 0 37 198 237 290 MFI5405737.1 7-carboxy-7-deazaguanine synthase QueE [Nitrososphaerales archaeon] diamond 552 88.6 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales     Nitrososphaerales archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;