RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA889065" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 12 ✖

bioproject 1

  • PRJNA889065 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26960401 26960401 PRJNA889065_S_NODE_31662_length_171_cov_1.078125_g31424_i0 PRJNA889065 31662 171 1.078125 1.84359375 Candidatus Peregrinibacteria bacterium GW2 2030811 Bacteria Bacteria 43.9 0.00494   NR KKP37644.1 1619065 g31424 i0 41.3 0.807017543859649 46 27 80.7 0 25 162 168 213 KKP37644.1 MAG: NusG antitermination factor, transcriptional antiterminator NusG [Candidatus Peregrinibacteria bacterium GW2011_GWF2_33_10] diamond 138 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium GW2011_GWF2_33_10
28097745 28097745 PRJNA889065_S_NODE_9925_length_303_cov_4.634615_g9687_i0 PRJNA889065 9925 303 4.634615 14.04288345 Patescibacteria group bacterium 2052139 Bacteria Bacteria 151 1.52e-40   NR MCL4419431.1 2052139 g9687 i0 82.2 0.891089108910891 90 15 88.1 1 300 34 498 587 MCL4419431.1 hypothetical protein [Patescibacteria group bacterium] diamond 270 151 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
28792264 28792264 PRJNA889065_S_NODE_26487_length_188_cov_3.455172_g26249_i0 PRJNA889065 26487 188 3.455172 6.49572336 Patescibacteria group bacterium 2052139 Bacteria Bacteria 42 0.0322   NR MCA9352618.1 2052139 g26249 i0 35.5 0.98936170212766 62 38 97.3 2 183 1 127 187 MCA9352618.1 hypothetical protein [Patescibacteria group bacterium] diamond 186 42 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
28800045 28800045 PRJNA889065_S_NODE_5367_length_406_cov_1.842975_g5129_i0 PRJNA889065 5367 406 1.842975 7.4824785 Bacteria 2 Bacteria Bacteria 84 4.36e-16   NR MBU0531484.1 2052139 g5129 i0 43.2 9.05172413793103 111 58 82 2 404 72 246 351 MBU0531484.1 peptide chain release factor 1 [Patescibacteria group bacterium] diamond 3675 84.7 0.991735537190083 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
29297634 29297634 PRJNA889065_S_NODE_20649_length_214_cov_2.152047_g20411_i0 PRJNA889065 20649 214 2.152047 4.60538058 Patescibacteria group bacterium 2052139 Bacteria Bacteria 45.1 3.83e-4   NR MDE1971439.1 2052139 g20411 i0 33.3 0.672897196261682 48 32 67.3 0 185 42 9 56 MDE1971439.1 hypothetical protein [Patescibacteria group bacterium] diamond 144 45.1 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
30055357 30055357 PRJNA889065_S_NODE_22091_length_207_cov_1.682927_g21853_i0 PRJNA889065 22091 207 1.682927 3.48365889 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 50.1 3.6e-5   NR MFS8160316.1 2282149 g21853 i0 38.8 2.94202898550725 67 36 97.1 2 2 202 134 195 MFS8160316.1 WD40 repeat domain-containing protein [Candidatus Roizmanbacteria bacterium] diamond 609 50.1 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
31414357 31414357 PRJNA889065_S_NODE_22936_length_203_cov_1.725000_g22698_i0 PRJNA889065 22936 203 1.725 3.50175 Candidatus Dependentiae bacterium 2030827 Bacteria Bacteria 67.4 8.6e-13   NR RTL06915.1 2030827 g22698 i0 65.2 0.679802955665025 46 16 68 0 156 19 37 82 RTL06915.1 MAG: hypothetical protein EKK58_03725 [Candidatus Dependentiae bacterium] diamond 138 67.4 1 Bacteria Bacteria candidate phyla             Candidatus Babelota bacterium
31445991 31445991 PRJNA889065_S_NODE_34476_length_163_cov_1.150000_g34238_i0 PRJNA889065 34476 163 1.15 1.8745 Candidatus Eiseniibacteriota bacterium 2212470 Bacteria Bacteria 42 0.0232   NR MBU1702138.1 2212470 g34238 i0 52.9 2.13496932515337 34 16 62.6 0 108 7 2 35 MBU1702138.1 acyl-CoA dehydrogenase family protein [Candidatus Eiseniibacteriota bacterium] diamond 348 42 1 Bacteria Bacteria candidate phyla   Candidatus Eiseniibacteriota         Candidatus Eiseniibacteriota bacterium
31762198 31762198 PRJNA889065_S_NODE_13697_length_261_cov_2.137615_g13459_i0 PRJNA889065 13697 261 2.137615 5.57917515 Candidatus Daviesbacteria bacterium 2053542 Bacteria Bacteria 42.7 0.0479   NR MDD5416035.1 2053542 g13459 i0 35.8 0.770114942528736 67 33 77 2 4 204 130 186 MDD5416035.1 IPT/TIG domain-containing protein [Candidatus Daviesbacteria bacterium] diamond 201 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Daviesiibacteriota         Candidatus Daviesbacteria bacterium
31762220 31762220 PRJNA889065_S_NODE_9977_length_303_cov_1.592308_g9739_i0 PRJNA889065 9977 303 1.592308 4.82469324 Patescibacteria group bacterium 2052139 Bacteria Bacteria 44.3 0.0214   NR HYE10182.1 2052139 g9739 i0 37.2 0.772277227722772 78 47 75.2 1 239 12 245 322 HYE10182.1 hypothetical protein [Patescibacteria group bacterium] diamond 234 44.3 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32015342 32015342 PRJNA889065_S_NODE_26758_length_187_cov_2.722222_g26520_i0 PRJNA889065 26758 187 2.722222 5.09055514 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 48.1 2.25e-4   NR HLC41421.1 2072417 g26520 i0 45 0.962566844919786 60 27 96.3 1 183 4 453 506 HLC41421.1 M1 family metallopeptidase [Candidatus Methylomirabilota bacterium] diamond 180 48.1 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
32300501 32300501 PRJNA889065_S_NODE_6859_length_361_cov_2.509434_g6621_i0 PRJNA889065 6859 361 2.509434 9.05905674 Patescibacteria group bacterium 2052139 Bacteria Bacteria 124 2.66e-31   NR MCL4419852.1 2052139 g6621 i0 83.1 0.590027700831025 71 12 59 0 3 215 331 401 MCL4419852.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Patescibacteria group bacterium] diamond 213 124 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;