RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA888821" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA888821 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2138152 2138152 PRJNA888821_P_NODE_23602_length_301_cov_121.232456_g23520_i0 PRJNA888821 23602 301 121.232456 364.90969256 Nyctereutes procyonoides 34880 Chordata Chordata 75.9 1.85e-14   NR CAD7688991.1 34880 g23520 i0 56.7 2.69102990033223 90 36 88.7 2 267 1 99 186 CAD7688991.1 unnamed protein product [Nyctereutes procyonoides] diamond 810 75.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Nyctereutes Nyctereutes procyonoides
22539737 22539737 PRJNA888821_P_NODE_37538_length_245_cov_0.895349_g37455_i0 PRJNA888821 37538 245 0.895349 2.19360505 Mus musculus 10090 Chordata Chordata 80.5 1.71e-15   NR EDL00544.1 10090 g37455 i0 72 4.89795918367347 50 14 61.2 0 243 94 332 381 EDL00544.1 mCG142377, partial [Mus musculus] diamond 1200 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28381922 28381922 PRJNA888821_P_NODE_37146_length_246_cov_0.890173_g37063_i0 PRJNA888821 37146 246 0.890173 2.18982558 Grus japonensis 30415 Chordata Chordata 104 1.47e-25   NR GAB0201193.1 30415 g37063 i0 71.6 0.98780487804878 81 23 98.8 0 3 245 138 218 GAB0201193.1 mannose-P-dolichol utilization defect 1 protein [Grus japonensis] diamond 243 104 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
28666233 28666233 PRJNA888821_P_NODE_22327_length_308_cov_1.144681_g22245_i0 PRJNA888821 22327 308 1.144681 3.52561748 Gallus gallus 9031 Chordata Chordata 73.6 2.41e-14   NR CAB94241.1 9031 g22245 i0 50 0.74025974025974 76 38 74 0 235 8 1 76 CAB94241.1 cytochrome b, partial [Gallus gallus] diamond 228 73.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
28863318 28863318 PRJNA888821_P_NODE_38808_length_242_cov_1.384615_g38725_i0 PRJNA888821 38808 242 1.384615 3.3507683 Squamata 8509 Chordata Chordata 106 4.17e-28   NR AAC83212.1 63339 g38725 i0 91.1 160.425619834711 56 5 69.4 0 237 70 30 85 AAC83212.1 cytochrome b, partial [Chalcides sexlineatus] diamond 38823 107 0.990654205607477 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Chalcides Chalcides sexlineatus
29076729 29076729 PRJNA888821_P_NODE_46848_length_215_cov_6.823944_g46765_i0 PRJNA888821 46848 215 6.823944 14.6714796 Ascaphus truei 8439 Chordata Chordata 41.2 0.0225   NR MEE6492174.1 8439 g46765 i0 44.1 0.474418604651163 34 19 47.4 0 45 146 49 82 MEE6492174.1 hypothetical protein [Ascaphus truei] diamond 102 41.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
30940302 30940302 PRJNA888821_P_NODE_29114_length_274_cov_1.383085_g29032_i0 PRJNA888821 29114 274 1.383085 3.7896529 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 51.2 6.52e-6   NR CAI9154811.1 3082113 g29032 i0 82.1 0.306569343065693 28 5 30.7 0 273 190 73 100 CAI9154811.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 84 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
31129379 31129379 PRJNA888821_P_NODE_38855_length_242_cov_0.911243_g38772_i0 PRJNA888821 38855 242 0.911243 2.20520806 Aquarana catesbeiana 8400 Chordata Chordata 115 9.56e-28   NR PIO38716.1 8400 g38772 i0 70 0.991735537190083 80 24 99.2 0 240 1 71 150 PIO38716.1 hypothetical protein AB205_0103790, partial [Aquarana catesbeiana] diamond 240 115 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
32426702 32426702 PRJNA888821_P_NODE_36579_length_247_cov_0.885057_g36496_i0 PRJNA888821 36579 247 0.885057 2.18609079 Pelobates cultripes 61616 Chordata Chordata 60.8 1.6e-8   NR CAH2282881.1 61616 g36496 i0 100 1.26315789473684 26 0 31.6 0 239 162 944 969 CAH2282881.1 nucleolar GTP-binding 1 [Pelobates cultripes] diamond 312 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates cultripes

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;