RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA888821" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA888821 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27727174 27727174 PRJNA888821_P_NODE_22644_length_307_cov_9.893162_g22562_i0 PRJNA888821 22644 307 9.893162 30.37200734 Parachlamydiales 1963360 Bacteria Bacteria 54.3 3.97e-6   NR WP_068471341.1 1414722 g22562 i0 53.3 1.76872964169381 45 21 44 0 3 137 167 211 WP_068471341.1 class I SAM-dependent methyltransferase [Candidatus Protochlamydia phocaeensis] diamond 543 54.7 0.992687385740402 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
29834348 29834348 PRJNA888821_P_NODE_2571_length_411_cov_1.000000_g2492_i0 PRJNA888821 2571 411 1 4.11 Chlamydia psittaci 83554 Bacteria Bacteria 50.8 9.19e-6   NR EPL00669.1 1112260 g2492 i0 55 0.291970802919708 40 18 29.2 0 190 309 2 41 EPL00669.1 hypothetical protein CP02DC24_1093 [Chlamydia psittaci 02DC24] diamond 120 50.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31762179 31762179 PRJNA888821_P_NODE_22957_length_307_cov_3.324786_g22875_i0 PRJNA888821 22957 307 3.324786 10.20709302 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 87.8 6.65e-18   NR WP_195155545.1 1414722 g22875 i0 81.6 0.478827361563518 49 9 47.9 0 307 161 135 183 WP_195155545.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase [Candidatus Protochlamydia phocaeensis] diamond 147 87.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;