RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA888821" and tax_phylum = "Candidatus Curtissiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Curtissiibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA888821 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28823683 28823683 PRJNA888821_P_NODE_12328_length_310_cov_8.666667_g12246_i0 PRJNA888821 12328 310 8.666667 26.8666677 Candidatus Curtissbacteria bacterium GW2 2750075 Bacteria Bacteria 85.5 2.23e-17   NR KKQ89821.1 1618414 g12246 i0 40 1.98387096774194 105 51 90 1 286 8 135 239 KKQ89821.1 MAG: Glycosyl transferase family 2 [Candidatus Curtissbacteria bacterium GW2011_GWC2_38_9] diamond 615 85.5 1 Bacteria Bacteria candidate phyla   Candidatus Curtissiibacteriota         Candidatus Curtissbacteria bacterium GW2011_GWC2_38_9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;