RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA888821" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA888821 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25088997 25088997 PRJNA888821_P_NODE_36200_length_248_cov_0.880000_g36117_i0 PRJNA888821 36200 248 0.88 2.1824 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 130 7.019999999999998e-35   NR EPY22906.1 28005 g36117 i0 79 1.94758064516129 81 17 98 0 244 2 127 207 EPY22906.1 large subunit ribosomal protein LP0 [Strigomonas culicis] diamond 483 130 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
32490133 32490133 PRJNA888821_P_NODE_35939_length_248_cov_5.862857_g35856_i0 PRJNA888821 35939 248 5.862857 14.53988536 Acrasis kona 1008807 Heterolobosea other_Eukaryota 68.2 3.92e-11   NR KAL0482300.1 1008807 g35856 i0 84.2 0.459677419354839 38 6 46 0 207 94 98 135 KAL0482300.1 3-hydroxyisobutyryl-CoA hydrolase [Acrasis kona] diamond 114 68.2 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;