RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA888104" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA888104 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30813716 30813716 PRJNA888104_P_NODE_17854_length_243_cov_1.666667_g17785_i0 PRJNA888104 17854 243 1.666667 4.05000081 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 53.1 7.96e-6   NR XP_004030469.1 5932 g17785 i0 60.4 1.16049382716049 53 18 61.7 2 2 151 329 381 XP_004030469.1 kinesin motor domain protein [Ichthyophthirius multifiliis] diamond 282 53.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
31066741 31066741 PRJNA888104_P_NODE_17195_length_248_cov_1.592179_g17126_i0 PRJNA888104 17195 248 1.592179 3.94860392 Paramecium primaurelia 5886 SAR_Eukaryotes SAR_Eukaryotes 117 2.08e-29   NR CAD8060455.1 5886 g17126 i0 64.6 3.82258064516129 79 28 95.6 0 9 245 171 249 CAD8060455.1 unnamed protein product [Paramecium primaurelia] diamond 948 117 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
31540921 31540921 PRJNA888104_P_NODE_17096_length_249_cov_1.594444_g17027_i0 PRJNA888104 17096 249 1.594444 3.97016556 Tetrahymena utriculariae 2486642 SAR_Eukaryotes SAR_Eukaryotes 90.1 8.54e-19   NR KAL4465702.1 2486642 g17027 i0 52.1 2.66265060240964 71 31 81.9 1 246 43 397 467 KAL4465702.1 hypothetical protein ABPG72_012384 [Tetrahymena utriculariae] diamond 663 90.1 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena utriculariae
31540922 31540922 PRJNA888104_P_NODE_22596_length_229_cov_0.912500_g22527_i0 PRJNA888104 22596 229 0.9125 2.089625 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 67.8 4.63e-11   NR KRX06774.1 266149 g22527 i0 45.3 0.982532751091703 75 41 98.3 0 3 227 247 321 KRX06774.1 P-loop containing nucleoside triphosphate hydrolase [Pseudocohnilembus persalinus] diamond 225 67.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;