contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA888104" and tax_phylum = "Chordata"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26643807 | 26643807 | PRJNA888104_P_NODE_14321_length_271_cov_4.287129_g14252_i0 | PRJNA888104 | 14321 | 271 | 4.287129 | 11.61811959 | Gulo gulo | 48420 | Chordata | Chordata | 67.4 | 6.55e-12 | NR | VCW91066.1 | 48420 | g14252 | i0 | 56.9 | 13.0073800738007 | 65 | 11 | 56.5 | 2 | 3 | 155 | 69 | 130 | VCW91066.1 unnamed protein product [Gulo gulo] | diamond | 3525 | 67.4 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Mammalia | Carnivora | Mustelidae | Gulo | Gulo gulo | |
| 27568791 | 27568791 | PRJNA888104_P_NODE_20264_length_234_cov_0.872727_g20195_i0 | PRJNA888104 | 20264 | 234 | 0.872727 | 2.04218118 | Chordata | 7711 | Chordata | Chordata | 156 | 5.589999999999998e-47 | NR | XP_067871554.1 | 7792 | g20195 | i0 | 93.5 | 107.5 | 77 | 5 | 98.7 | 0 | 232 | 2 | 50 | 126 | XP_067871554.1 cytochrome c oxidase subunit 5A, mitochondrial-like [Heterodontus francisci] | diamond | 25155 | 157 | 0.993630573248408 | Eukaryota | Opisthokonta | Metazoa | Chordata | Chondrichthyes | Heterodontiformes | Heterodontidae | Heterodontus | Heterodontus francisci | |
| 28097697 | 28097697 | PRJNA888104_P_NODE_20305_length_233_cov_2.926829_g20236_i0 | PRJNA888104 | 20305 | 233 | 2.926829 | 6.81951157 | Corvus kubaryi | 68294 | Chordata | Chordata | 102 | 4.4699999999999996e-23 | NR | XP_041876411.1 | 68294 | g20236 | i0 | 69.4 | 1.09442060085837 | 85 | 14 | 94 | 1 | 3 | 221 | 625 | 709 | XP_041876411.1 uncharacterized protein LOC121660879 [Corvus kubaryi] | diamond | 255 | 102 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Aves | Passeriformes | Corvidae | Corvus | Corvus kubaryi | |
| 28579369 | 28579369 | PRJNA888104_P_NODE_13887_length_276_cov_0.946860_g13818_i0 | PRJNA888104 | 13887 | 276 | 0.94686 | 2.6133336 | Chordata | 7711 | Chordata | Chordata | 157 | 1.08e-46 | NR | KFP02737.1 | 9244 | g13818 | i0 | 97.4 | 53.6630434782609 | 76 | 2 | 82.6 | 0 | 276 | 49 | 121 | 196 | KFP02737.1 Ribosome biogenesis protein NSA2, partial [Calypte anna] | diamond | 14811 | 158 | 0.993670886075949 | Eukaryota | Opisthokonta | Metazoa | Chordata | Aves | Apodiformes | Trochilidae | Calypte | Calypte anna | |
| 29431500 | 29431500 | PRJNA888104_P_NODE_21169_length_232_cov_0.883436_g21100_i0 | PRJNA888104 | 21169 | 232 | 0.883436 | 2.04957152 | Chondrichthyes | 7777 | Chordata | Chordata | 168 | 2.33e-49 | NR | XP_041044796.1 | 13397 | g21100 | i0 | 97.4 | 77.6637931034483 | 77 | 2 | 99.6 | 0 | 231 | 1 | 265 | 341 | XP_041044796.1 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial isoform X2 [Carcharodon carcharias] | diamond | 18018 | 168 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Chondrichthyes | Lamniformes | Alopiidae | Carcharodon | Carcharodon carcharias | |
| 29455055 | 29455055 | PRJNA888104_P_NODE_19690_length_235_cov_0.867470_g19621_i0 | PRJNA888104 | 19690 | 235 | 0.86747 | 2.0385545 | Bufotes viridis | 30338 | Chordata | Chordata | 43.9 | 0.0128 | NR | CAK8629749.1 | 30338 | g19621 | i0 | 69.6 | 0.293617021276596 | 23 | 7 | 29.4 | 0 | 79 | 147 | 335 | 357 | CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] | diamond | 69 | 43.9 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Amphibia | Anura | Bufonidae | Bufotes | Bufotes viridis | |
| 29462951 | 29462951 | PRJNA888104_P_NODE_19310_length_235_cov_3.060241_g19241_i0 | PRJNA888104 | 19310 | 235 | 3.060241 | 7.19156635 | Chondrichthyes | 7777 | Chordata | Chordata | 159 | 2.4899999999999997e-48 | NR | AEM46243.1 | 46612 | g19241 | i0 | 98.7 | 56.7446808510638 | 78 | 1 | 99.6 | 0 | 234 | 1 | 24 | 101 | AEM46243.1 ribosomal protein L8, partial [Carcharhinus leucas] | diamond | 13335 | 160 | 0.99375 | Eukaryota | Opisthokonta | Metazoa | Chordata | Chondrichthyes | Carcharhiniformes | Carcharhinidae | Carcharhinus | Carcharhinus leucas | |
| 29652410 | 29652410 | PRJNA888104_P_NODE_7310_length_363_cov_0.979592_g7241_i0 | PRJNA888104 | 7310 | 363 | 0.979592 | 3.55591896 | Cladistia | 1338366 | Chordata | Chordata | 211 | 5.2e-64 | NR | KYO20403.1 | 8496 | g7241 | i0 | 99 | 73.2561983471074 | 105 | 1 | 86.8 | 0 | 317 | 3 | 31 | 135 | KYO20403.1 40S ribosomal protein S14 [Alligator mississippiensis] | diamond | 26592 | 213 | 0.990610328638498 | Eukaryota | Opisthokonta | Metazoa | Chordata | Crocodylia | Alligatoridae | Alligator | Alligator mississippiensis | ||
| 32402964 | 32402964 | PRJNA888104_P_NODE_11039_length_304_cov_1.280851_g10970_i0 | PRJNA888104 | 11039 | 304 | 1.280851 | 3.89378704 | Passeriformes | 9126 | Chordata | Chordata | 110 | 4.68e-28 | NR | NXO99573.1 | 73330 | g10970 | i0 | 66.3 | 2.28947368421053 | 89 | 16 | 74 | 1 | 304 | 80 | 21 | 109 | NXO99573.1 RL19 protein [Certhia brachydactyla] | diamond | 696 | 110 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Aves | Passeriformes | Certhiidae | Certhia | Certhia brachydactyla | |
| 32623981 | 32623981 | PRJNA888104_P_NODE_22300_length_229_cov_2.256250_g22231_i0 | PRJNA888104 | 22300 | 229 | 2.25625 | 5.1668125 | root | 1 | Root_unresolved | Root_unresolved | 155 | 9.439999999999998e-47 | NR | XP_070721757.1 | 55135 | g22231 | i0 | 100 | 127.71615720524 | 75 | 0 | 98.3 | 0 | 3 | 227 | 33 | 107 | XP_070721757.1 small ribosomal subunit protein eS24 isoform X2 [Pristiophorus japonicus] | diamond | 29247 | 155 | 1 | Eukaryota | Opisthokonta | Metazoa | Chordata | Chondrichthyes | Pristiophoridae | Pristiophorus | Pristiophorus japonicus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;