RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA888104" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA888104 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28516181 28516181 PRJNA888104_P_NODE_14627_length_269_cov_1.195000_g14558_i0 PRJNA888104 14627 269 1.195 3.21455 Sediminibacterium 504481 Bacteria Bacteria 168 3.02e-46   NR WP_294996990.1 796894 g14558 i0 93.3 7.84014869888476 89 6 99.3 0 268 2 269 357 WP_294996990.1 cytochrome c biogenesis protein CcsA [uncultured Sediminibacterium sp.] diamond 2109 169 0.994082840236686 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium uncultured Sediminibacterium sp.
28666222 28666222 PRJNA888104_P_NODE_20987_length_232_cov_0.895706_g20918_i0 PRJNA888104 20987 232 0.895706 2.07803792 Cyclobacteriaceae bacterium 2099675 Bacteria Bacteria 52.4 1.29e-5   NR MEQ8714402.1 2099675 g20918 i0 71.8 0.504310344827586 39 11 50.4 0 230 114 477 515 MEQ8714402.1 Ig-like domain-containing protein [Cyclobacteriaceae bacterium] diamond 117 52.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Cyclobacteriaceae   Cyclobacteriaceae bacterium
28982060 28982060 PRJNA888104_P_NODE_11828_length_296_cov_0.960352_g11759_i0 PRJNA888104 11828 296 0.960352 2.84264192 Formosa sp. Hel1_33_131 1336794 Bacteria Bacteria 42.7 0.0293   NR WP_069676272.1 1336794 g11759 i0 37 0.547297297297297 54 30 54.7 1 105 266 83 132 WP_069676272.1 cytochrome C [Formosa sp. Hel1_33_131] diamond 162 42.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Formosa Formosa sp. Hel1_33_131

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;