RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA888104" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA888104 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27908017 27908017 PRJNA888104_P_NODE_22045_length_230_cov_0.906832_g21976_i0 PRJNA888104 22045 230 0.906832 2.0857136 Lachnospiraceae bacterium 1898203 Bacteria Bacteria 42.4 0.0386   NR MCR4686858.1 1898203 g21976 i0 33.3 0.9 69 45 90 1 212 6 17 84 MCR4686858.1 hemolysin III family protein [Lachnospiraceae bacterium] diamond 207 42.4 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
31256140 31256140 PRJNA888104_P_NODE_475_length_1232_cov_64.892519_g438_i0 PRJNA888104 475 1232 64.892519 799.47583408 Virgibacillus sp. 19R1-5 2834410 Bacteria Bacteria 242 6.089999999999999e-74   NR WP_213406776.1 2834410 g438 i0 73.2 0.655032467532468 269 69 64.8 1 2 799 2 270 WP_213406776.1 hypothetical protein, partial [Virgibacillus sp. 19R1-5] diamond 807 242 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Virgibacillus Virgibacillus sp. 19R1-5

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;