RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA886442" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA886442 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21263959 21263959 PRJNA886442_P_NODE_8177_length_280_cov_1.275362_g8013_i0 PRJNA886442 8177 280 1.275362 3.5710136 Candidatus Methylacidiphilales bacterium 2720631 Bacteria Bacteria 181 4.209999999999999e-55   NR HEY8965962.1 2720631 g8013 i0 91.4 0.996428571428571 93 8 99.6 0 280 2 38 130 HEY8965962.1 MBL fold metallo-hydrolase [Candidatus Methylacidiphilales bacterium] diamond 279 181 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales     Candidatus Methylacidiphilales bacterium
30971869 30971869 PRJNA886442_P_NODE_8794_length_272_cov_0.969849_g8630_i0 PRJNA886442 8794 272 0.969849 2.63798928 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 71.6 3.29e-12   NR MBT8036538.1 2499141 g8630 i0 40.3 0.794117647058823 72 43 79.4 0 57 272 1 72 MBT8036538.1 CDP-glycerol glycerophosphotransferase family protein [Verrucomicrobiia bacterium] diamond 216 71.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31509346 31509346 PRJNA886442_P_NODE_14096_length_244_cov_0.912281_g13932_i0 PRJNA886442 14096 244 0.912281 2.22596564 Candidatus Methylacidiphilales bacterium 2720631 Bacteria Bacteria 154 8.929999999999999e-45   NR HEY8966496.1 2720631 g13932 i0 96.2 1.95491803278689 79 3 97.1 0 242 6 61 139 HEY8966496.1 signal peptide peptidase SppA [Candidatus Methylacidiphilales bacterium] diamond 477 154 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Methylacidiphilae Methylacidiphilales     Candidatus Methylacidiphilales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;