RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

28 rows where analysis = "diamond", bioproject = "PRJNA886442" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 28 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA886442 · 28 ✖

analysis 1

  • diamond · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22538785 22538785 PRJNA886442_P_NODE_918_length_718_cov_10.272868_g759_i0 PRJNA886442 918 718 10.272868 73.75919224 Struthio camelus 8801 Chordata Chordata 280 1.64e-92   NR XP_068785623.1 8801 g759 i0 67.4 0.793871866295265 190 56 76.9 1 2 553 7 196 XP_068785623.1 vitelline membrane outer layer protein 1-like [Struthio camelus] diamond 570 280 1 Eukaryota Opisthokonta Metazoa Chordata Aves Struthioniformes Struthionidae Struthio Struthio camelus
26873815 26873815 PRJNA886442_P_NODE_8881_length_270_cov_1.675127_g8717_i0 PRJNA886442 8881 270 1.675127 4.5228429 Passeriformes 9126 Chordata Chordata 111 6.019999999999999e-28   NR XP_032939594.1 91951 g8717 i0 61.2 3.26666666666667 98 29 98.9 1 268 2 100 197 XP_032939594.1 ER membrane protein complex subunit 10 [Catharus ustulatus] diamond 882 111 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Turdidae Catharus Catharus ustulatus
27371880 27371880 PRJNA886442_P_NODE_9123_length_267_cov_1.448454_g8959_i0 PRJNA886442 9123 267 1.448454 3.86737218 Protobothrops mucrosquamatus 103944 Chordata Chordata 45.4 0.00393   NR XP_029141007.1 103944 g8959 i0 41 0.685393258426966 61 32 66.3 2 203 27 12 70 XP_029141007.1 E3 ubiquitin-protein ligase RNF170-like [Protobothrops mucrosquamatus] diamond 183 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Protobothrops Protobothrops mucrosquamatus
27821656 27821656 PRJNA886442_P_NODE_12324_length_248_cov_0.891429_g12160_i0 PRJNA886442 12324 248 0.891429 2.21074392 Chordata 7711 Chordata Chordata 101 1.1399999999999999e-24   NR XP_012890830.1 10020 g12160 i0 96 8.05645161290323 50 2 60.5 0 151 2 18 67 XP_012890830.1 PREDICTED: vesicle-associated membrane protein 7 isoform X3 [Dipodomys ordii] diamond 1998 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Heteromyidae Dipodomys Dipodomys ordii
27876710 27876710 PRJNA886442_P_NODE_6565_length_306_cov_1.231760_g6401_i0 PRJNA886442 6565 306 1.23176 3.7691856 Protopterus annectens 7888 Chordata Chordata 199 2.8499999999999997e-61   NR XP_043914878.1 7888 g6401 i0 96.1 20 102 4 100 0 1 306 118 219 XP_043914878.1 eukaryotic translation initiation factor 3 subunit M isoform X2 [Protopterus annectens] diamond 6120 201 0.990049751243781 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
28358062 28358062 PRJNA886442_P_NODE_2966_length_413_cov_2.255882_g2802_i0 PRJNA886442 2966 413 2.255882 9.31679266 root 1 Root_unresolved Root_unresolved 265 5.22e-88   NR XP_037755641.2 8469 g2802 i0 99.3 20.8111380145278 137 1 99.5 0 1 411 56 192 XP_037755641.2 40S ribosomal protein S13 [Chelonia mydas] diamond 8595 266 0.996240601503759 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
28516180 28516180 PRJNA886442_P_NODE_4327_length_358_cov_0.919298_g4163_i0 PRJNA886442 4327 358 0.919298 3.29108684 Amphibia 8292 Chordata Chordata 242 9.42e-75   NR XP_069501697.1 8296 g4163 i0 99.2 233.329608938547 119 1 99.7 0 2 358 203 321 XP_069501697.1 eukaryotic peptide chain release factor GTP-binding subunit ERF3A [Ambystoma mexicanum] diamond 83532 242 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
28540014 28540014 PRJNA886442_P_NODE_10747_length_252_cov_0.871508_g10583_i0 PRJNA886442 10747 252 0.871508 2.19620016 Rhincodon typus 259920 Chordata Chordata 172 8.39e-48   NR XP_048449126.1 259920 g10583 i0 98.8 47 84 1 100 0 1 252 49 132 XP_048449126.1 splicing factor 3B subunit 3, partial [Rhincodon typus] diamond 11844 173 0.994219653179191 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Rhincodontidae Rhincodon Rhincodon typus
28571301 28571301 PRJNA886442_P_NODE_4067_length_366_cov_1.406143_g3903_i0 PRJNA886442 4067 366 1.406143 5.14648338 Polypterus senegalus 55291 Chordata Chordata 234 3.42e-74   NR KAG2455469.1 55291 g3903 i0 95.1 39 122 6 100 0 366 1 195 316 KAG2455469.1 SAR1A protein, partial [Polypterus senegalus] diamond 14274 234 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28831730 28831730 PRJNA886442_P_NODE_7448_length_291_cov_1.073394_g7284_i0 PRJNA886442 7448 291 1.073394 3.12357654 Chordata 7711 Chordata Chordata 132 9.91e-36   NR ERE71686.1 10029 g7284 i0 98.4 35.0618556701031 63 1 64.9 0 190 2 12 74 ERE71686.1 eukaryotic translation initiation factor 6 [Cricetulus griseus] diamond 10203 133 0.992481203007519 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
29202999 29202999 PRJNA886442_P_NODE_6069_length_315_cov_1.289256_g5905_i0 PRJNA886442 6069 315 1.289256 4.0611564 Melospiza melodia maxima 2498840 Chordata Chordata 49.3 2.78e-5   NR KAF2975739.1 2498840 g5905 i0 60.6 0.580952380952381 33 13 31.4 0 306 208 26 58 KAF2975739.1 hypothetical protein EK904_014053 [Melospiza melodia maxima] diamond 183 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passerellidae Melospiza Melospiza melodia
29297595 29297595 PRJNA886442_P_NODE_4209_length_361_cov_1.635417_g4045_i0 PRJNA886442 4209 361 1.635417 5.90385537 Hyla sarda 327740 Chordata Chordata 205 7.11e-65   NR XP_056390125.1 327740 g4045 i0 100 71.7340720221607 92 0 76.5 0 1 276 37 128 XP_056390125.1 SUMO-conjugating enzyme UBC9 isoform X1 [Hyla sarda] diamond 25896 205 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
29526561 29526561 PRJNA886442_P_NODE_4430_length_354_cov_1.334520_g4266_i0 PRJNA886442 4430 354 1.33452 4.7242008 root 1 Root_unresolved Root_unresolved 44.7 0.0284   NR OWK13398.1 46360 g4266 i0 55.9 1.20338983050847 34 15 28.8 0 7 108 502 535 OWK13398.1 EHMT2 [Cervus elaphus hippelaphus] diamond 426 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
29549967 29549967 PRJNA886442_P_NODE_10510_length_253_cov_0.866667_g10346_i0 PRJNA886442 10510 253 0.866667 2.19266751 Diceros bicornis minor 77932 Chordata Chordata 95.9 2.46e-22   NR KAF5917670.1 77932 g10346 i0 76.6 20.5494071146245 64 15 75.9 0 60 251 54 117 KAF5917670.1 hypothetical protein HPG69_013506 [Diceros bicornis minor] diamond 5199 95.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Diceros Diceros bicornis
29842193 29842193 PRJNA886442_P_NODE_9911_length_257_cov_1.271739_g9747_i0 PRJNA886442 9911 257 1.271739 3.26836923 Chordata 7711 Chordata Chordata 144 2.849999999999999e-41   NR XP_009995575.1 8897 g9747 i0 96 80.2879377431907 75 3 87.5 0 3 227 141 215 XP_009995575.1 PREDICTED: eukaryotic translation initiation factor 1A, X-chromosomal [Chaetura pelagica] diamond 20634 145 0.993103448275862 Eukaryota Opisthokonta Metazoa Chordata Aves Apodiformes Apodidae Chaetura Chaetura pelagica
30189661 30189661 PRJNA886442_P_NODE_11612_length_250_cov_0.881356_g11448_i0 PRJNA886442 11612 250 0.881356 2.20339 Cladistia 1338366 Chordata Chordata 170 7.529999999999999e-47   NR XP_005997361.1 7897 g11448 i0 98.8 243.024 83 1 99.6 0 249 1 4251 4333 XP_005997361.1 E3 ubiquitin-protein ligase HUWE1 isoform X1 [Latimeria chalumnae] diamond 60756 171 0.994152046783626 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
30213294 30213294 PRJNA886442_P_NODE_3452_length_390_cov_1.132492_g3288_i0 PRJNA886442 3452 390 1.132492 4.4167188 Lontra canadensis 76717 Chordata Chordata 157 2.11e-44   NR XP_032738145.1 76717 g3288 i0 57 6.36923076923077 121 52 93.1 0 389 27 130 250 XP_032738145.1 importin subunit alpha-8-like [Lontra canadensis] diamond 2484 157 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Lontra Lontra canadensis
30308712 30308712 PRJNA886442_P_NODE_9832_length_258_cov_1.264865_g9668_i0 PRJNA886442 9832 258 1.264865 3.2633517 Myodes glareolus 447135 Chordata Chordata 106 1.4199999999999999e-25   NR KAK7814900.1 447135 g9668 i0 97.9 44.6395348837209 48 1 55.8 0 113 256 75 122 KAK7814900.1 hypothetical protein U0070_026401, partial [Myodes glareolus] diamond 11517 107 0.990654205607477 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Myodes Myodes glareolus
30316623 30316623 PRJNA886442_P_NODE_7492_length_290_cov_1.433180_g7328_i0 PRJNA886442 7492 290 1.43318 4.156222 Chordata 7711 Chordata Chordata 204 1.38e-63   NR XP_014340259.1 7897 g7328 i0 99 95.3379310344828 96 1 99.3 0 288 1 136 231 XP_014340259.1 MOB-like protein phocein isoform X3 [Latimeria chalumnae] diamond 27648 205 0.995121951219512 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
30474238 30474238 PRJNA886442_P_NODE_13273_length_246_cov_0.901734_g13109_i0 PRJNA886442 13273 246 0.901734 2.21826564 root 1 Root_unresolved Root_unresolved 149 4.7e-40   NR KAI6077004.1 8832 g13109 i0 95.1 68.5365853658537 82 3 100 1 246 1 152 232 KAI6077004.1 Catenin alpha-1 isoform X1 [Aix galericulata] diamond 16860 149 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Aix Aix galericulata
30782142 30782142 PRJNA886442_P_NODE_11374_length_251_cov_0.876404_g11210_i0 PRJNA886442 11374 251 0.876404 2.19977404 Cinclus cinclus 127875 Chordata Chordata 43.5 0.0204   NR XP_062362550.1 127875 g11210 i0 37.9 0.788844621513944 66 35 78.9 1 16 213 45 104 XP_062362550.1 LOW QUALITY PROTEIN: coordinator of PRMT5 and differentiation stimulator [Cinclus cinclus] diamond 198 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Cinclidae Cinclus Cinclus cinclus
31137298 31137298 PRJNA886442_P_NODE_12155_length_249_cov_0.886364_g11991_i0 PRJNA886442 12155 249 0.886364 2.20704636 Chordata 7711 Chordata Chordata 88.2 1.78e-19   NR XP_037764167.1 8469 g11991 i0 97.5 27.4819277108434 40 1 48.2 0 247 128 163 202 XP_037764167.1 malignant T-cell-amplified sequence 1 isoform X3 [Chelonia mydas] diamond 6843 88.6 0.99548532731377 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
31160935 31160935 PRJNA886442_P_NODE_3555_length_386_cov_0.996805_g3391_i0 PRJNA886442 3555 386 0.996805 3.8476673 Nipponia nippon 128390 Chordata Chordata 171 7.62e-49   NR XP_009463164.1 128390 g3391 i0 95.1 8.13730569948187 81 4 63 0 4 246 57 137 XP_009463164.1 PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Nipponia nippon] diamond 3141 172 0.994186046511628 Eukaryota Opisthokonta Metazoa Chordata Aves Pelecaniformes Threskiornithidae Nipponia Nipponia nippon
31264061 31264061 PRJNA886442_P_NODE_7595_length_289_cov_1.083333_g7431_i0 PRJNA886442 7595 289 1.083333 3.13083237 Chordata 7711 Chordata Chordata 195 1.44e-60   NR XP_006006856.1 7897 g7431 i0 100 81.9653979238754 94 0 97.6 0 287 6 87 180 XP_006006856.1 COP9 signalosome complex subunit 5 isoform X2 [Latimeria chalumnae] diamond 23688 195 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
31572622 31572622 PRJNA886442_P_NODE_5616_length_324_cov_1.820717_g5452_i0 PRJNA886442 5616 324 1.820717 5.89912308 Chelonia mydas 8469 Chordata Chordata 99 1.21e-22   NR XP_037742287.1 8469 g5452 i0 94.4 7.90740740740741 54 3 50 0 164 3 138 191 XP_037742287.1 histone H2A.Y [Chelonia mydas] diamond 2562 99 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
32561361 32561361 PRJNA886442_P_NODE_11899_length_249_cov_1.318182_g11735_i0 PRJNA886442 11899 249 1.318182 3.28227318 Chiroptera 9397 Chordata Chordata 150 8.18e-42   NR XP_054575963.1 29078 g11735 i0 96.3 56.3132530120482 82 3 98.8 0 248 3 150 231 XP_054575963.1 transcription factor Dp-1 isoform X3 [Eptesicus fuscus] diamond 14022 150 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Eptesicus Eptesicus fuscus
32812961 32812961 PRJNA886442_P_NODE_7780_length_286_cov_1.093897_g7616_i0 PRJNA886442 7780 286 1.093897 3.12854542 Chordata 7711 Chordata Chordata 198 3.3699999999999995e-61   NR ETE67788.1 8665 g7616 i0 98.9 81.7132867132867 95 1 99.7 0 286 2 153 247 ETE67788.1 Proteasome subunit alpha type-1, partial [Ophiophagus hannah] diamond 23370 200 0.99 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
32836554 32836554 PRJNA886442_P_NODE_15480_length_218_cov_8.972414_g15316_i0 PRJNA886442 15480 218 8.972414 19.55986252 Myiozetetes cayanensis 478635 Chordata Chordata 45.4 4.99e-4   NR XP_050166970.1 478635 g15316 i0 43.3 1.94036697247706 67 33 86.7 2 29 217 12 77 XP_050166970.1 hepcidin isoform X2 [Myiozetetes cayanensis] diamond 423 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Tyrannidae Myiozetetes Myiozetetes cayanensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;