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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA885753" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 13 ✖

tax_phylum 1

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA885753 · 13 ✖

analysis 1

  • diamond · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7239833 7239833 PRJNA885753_S_NODE_1726_length_337_cov_1.140152_g1708_i0 PRJNA885753 1726 337 1.140152 3.84231224 archaeon 1906665 Archaea Archaea 117 3.8e-29   NR RYH13701.1 1906665 g1708 i0 59.8 0.997032640949555 112 45 99.7 0 336 1 201 312 RYH13701.1 MAG: 50S ribosomal protein L4 [archaeon] diamond 336 117 1 Archaea               archaeon
14889685 14889685 PRJNA885753_S_NODE_2092_length_312_cov_0.979079_g2074_i0 PRJNA885753 2092 312 0.979079 3.05472648 Methanosarcina thermophila 2210 Archaea Archaea 96.3 4.449999999999999e-23   NR WP_149761821.1 2210 g2074 i0 76.1 0.644230769230769 67 16 64.4 0 112 312 1 67 WP_149761821.1 hypothetical protein [Methanosarcina thermophila] diamond 201 96.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila
26834041 26834041 PRJNA885753_S_NODE_4441_length_243_cov_1.264706_g4423_i0 PRJNA885753 4441 243 1.264706 3.07323558 archaeon 1906665 Archaea Archaea 143 7.87e-42   NR RYG68310.1 1906665 g4423 i0 88.2 0.938271604938272 76 9 93.8 0 228 1 3 78 RYG68310.1 MAG: hypothetical protein EON64_05455 [archaeon] diamond 228 143 1 Archaea               archaeon
26865903 26865903 PRJNA885753_S_NODE_4481_length_243_cov_0.917647_g4463_i0 PRJNA885753 4481 243 0.917647 2.22988221 archaeon 1906665 Archaea Archaea 82 5.62e-18   NR RYY73917.1 1906665 g4463 i0 67.6 0.839506172839506 68 20 84 1 3 206 9 74 RYY73917.1 MAG: 50S ribosomal protein P1 [archaeon] diamond 204 82 1 Archaea               archaeon
29620735 29620735 PRJNA885753_S_NODE_2730_length_282_cov_1.119617_g2712_i0 PRJNA885753 2730 282 1.119617 3.15731994 Methanosarcina 2207 Archaea Archaea 107 9.33e-27   NR WP_048046179.1 2209 g2712 i0 85.7 5.3936170212766 56 8 59.6 0 6 173 136 191 WP_048046179.1 tyrosine-type recombinase/integrase [Methanosarcina mazei] diamond 1521 107 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
30118525 30118525 PRJNA885753_S_NODE_2132_length_309_cov_1.322034_g2114_i0 PRJNA885753 2132 309 1.322034 4.08508506 archaeon 1906665 Archaea Archaea 152 3.87e-45   NR RYG63904.1 1906665 g2114 i0 87.5 0.854368932038835 88 11 85.4 0 3 266 41 128 RYG63904.1 MAG: hypothetical protein EON64_15030 [archaeon] diamond 264 152 1 Archaea               archaeon
30371824 30371824 PRJNA885753_S_NODE_3532_length_255_cov_1.285714_g3514_i0 PRJNA885753 3532 255 1.285714 3.2785707 archaeon 1906665 Archaea Archaea 122 2.04e-32   NR RYH14964.1 1906665 g3514 i0 81.6 0.894117647058824 76 14 89.4 0 228 1 6 81 RYH14964.1 MAG: glutathione S-transferase family protein [archaeon] diamond 228 122 1 Archaea               archaeon
31635615 31635615 PRJNA885753_S_NODE_4556_length_242_cov_0.923077_g4538_i0 PRJNA885753 4556 242 0.923077 2.23384634 Methanofollis ethanolicus 488124 Archaea Archaea 55.1 1.44e-6   NR WP_235809633.1 488124 g4538 i0 60.5 0.471074380165289 38 15 47.1 0 2 115 263 300 WP_235809633.1 lipopolysaccharide biosynthesis protein [Methanofollis ethanolicus] diamond 114 55.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis ethanolicus
31825292 31825292 PRJNA885753_S_NODE_1197_length_392_cov_2.128527_g1179_i0 PRJNA885753 1197 392 2.128527 8.34382584 archaeon 1906665 Archaea Archaea 248 1.63e-81   NR RYH25290.1 1906665 g1179 i0 93.8 0.994897959183674 130 8 99.5 0 392 3 19 148 RYH25290.1 MAG: 50S ribosomal protein L16 [archaeon] diamond 390 248 1 Archaea               archaeon
31888638 31888638 PRJNA885753_S_NODE_2157_length_308_cov_0.995745_g2139_i0 PRJNA885753 2157 308 0.995745 3.0668946 Methanosarcina sp. 2213 Archaea Archaea 130 3.9e-37   NR HHV23645.1 2213 g2139 i0 100 0.603896103896104 62 0 60.4 0 1 186 27 88 HHV23645.1 type II toxin-antitoxin system RelE/ParE family toxin [Methanosarcina sp.] diamond 186 130 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
32268601 32268601 PRJNA885753_S_NODE_2018_length_316_cov_1.345679_g2000_i0 PRJNA885753 2018 316 1.345679 4.25234564 archaeon 1906665 Archaea Archaea 65.5 4.05e-11   NR RYH28340.1 1906665 g2000 i0 67.1 0.778481012658228 82 23 77.8 1 3 248 39 116 RYH28340.1 MAG: 50S ribosomal protein P1 [archaeon] diamond 246 65.5 1 Archaea               archaeon
32616254 32616254 PRJNA885753_S_NODE_4360_length_244_cov_1.228070_g4342_i0 PRJNA885753 4360 244 1.22807 2.9964908 archaeon 1906665 Archaea Archaea 101 8.44e-26   NR RYG67591.1 1906665 g4342 i0 77.3 0.811475409836066 66 15 81.1 0 198 1 2 67 RYG67591.1 MAG: 50S ribosomal protein L23 [archaeon] diamond 198 101 1 Archaea               archaeon
32836552 32836552 PRJNA885753_S_NODE_4280_length_245_cov_0.906977_g4262_i0 PRJNA885753 4280 245 0.906977 2.22209365 Methanosarcina sp. 2213 Archaea Archaea 118 1.49e-29   NR HII80426.1 2213 g4262 i0 98.2 0.685714285714286 56 1 68.6 0 170 3 1 56 HII80426.1 hypothetical protein [Methanosarcina sp.] diamond 168 118 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;