RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA885753" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA885753 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26928918 26928918 PRJNA885753_S_NODE_4162_length_247_cov_0.879310_g4144_i0 PRJNA885753 4162 247 0.87931 2.1718957 Syntrophomonadaceae bacterium 2093811 Bacteria Bacteria 128 4.63e-33   NR HPF44611.1 2093811 g4144 i0 98.5 0.825910931174089 68 1 82.6 0 246 43 389 456 HPF44611.1 sodium:alanine symporter family protein [Syntrophomonadaceae bacterium] diamond 204 128 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Syntrophomonadaceae   Syntrophomonadaceae bacterium
27497930 27497930 PRJNA885753_S_NODE_3723_length_252_cov_0.871508_g3705_i0 PRJNA885753 3723 252 0.871508 2.19620016 Clostridia bacterium 2044939 Bacteria Bacteria 170 1.54e-47   NR MDD3613252.1 2044939 g3705 i0 97.6 0.988095238095238 83 2 98.8 0 251 3 349 431 MDD3613252.1 ribonucleoside triphosphate reductase [Clostridia bacterium] diamond 249 170 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
27750679 27750679 PRJNA885753_S_NODE_4584_length_242_cov_0.923077_g4566_i0 PRJNA885753 4584 242 0.923077 2.23384634 Tissierellia bacterium 2049431 Bacteria Bacteria 149 4.55e-43   NR NLL59970.1 2049431 g4566 i0 97.5 0.991735537190083 80 2 99.2 0 1 240 19 98 NLL59970.1 sodium:solute symporter family protein [Tissierellia bacterium] diamond 240 149 1 Bacteria   Bacillati Bacillota Tissierellia       Tissierellia bacterium
27782152 27782152 PRJNA885753_S_NODE_3424_length_258_cov_1.264865_g3406_i0 PRJNA885753 3424 258 1.264865 3.2633517 Bacillota bacterium 1879010 Bacteria Bacteria 178 7.03e-53   NR MDI9495031.1 1879010 g3406 i0 100 1 86 0 100 0 258 1 178 263 MDI9495031.1 DUF3810 domain-containing protein [Bacillota bacterium] diamond 258 178 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
29865921 29865921 PRJNA885753_S_NODE_4031_length_248_cov_0.891429_g4013_i0 PRJNA885753 4031 248 0.891429 2.21074392 Bacillota bacterium 1879010 Bacteria Bacteria 160 6.579999999999999e-47   NR HHW73462.1 1879010 g4013 i0 100 0.991935483870968 82 0 99.2 0 1 246 64 145 HHW73462.1 DegV family protein [Bacillota bacterium] diamond 246 160 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
30213283 30213283 PRJNA885753_S_NODE_3772_length_251_cov_0.876404_g3754_i0 PRJNA885753 3772 251 0.876404 2.19977404 Sedimentibacter sp. 1960295 Bacteria Bacteria 164 2.91e-47   NR HNZ82407.1 1960295 g3754 i0 91.6 2.97609561752988 83 7 99.2 0 251 3 250 332 HNZ82407.1 BMP family ABC transporter substrate-binding protein [Sedimentibacter sp.] diamond 747 164 1 Bacteria   Bacillati Bacillota Tissierellia     Sedimentibacter Sedimentibacter sp.
30276968 30276968 PRJNA885753_S_NODE_1892_length_325_cov_0.928571_g1874_i0 PRJNA885753 1892 325 0.928571 3.01785575 Bacillota bacterium 1879010 Bacteria Bacteria 170 2.1199999999999998e-52   NR MDI9496496.1 1879010 g1874 i0 98.9 0.830769230769231 90 1 83.1 0 2 271 35 124 MDI9496496.1 GntR family transcriptional regulator [Bacillota bacterium] diamond 270 170 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
30466525 30466525 PRJNA885753_S_NODE_3973_length_249_cov_0.886364_g3955_i0 PRJNA885753 3973 249 0.886364 2.20704636 Clostridiales bacterium 1898207 Bacteria Bacteria 157 2.26e-47   NR MCK9349811.1 1898207 g3955 i0 92.7 1.97590361445783 82 6 98.8 0 2 247 30 111 MCK9349811.1 purine-nucleoside phosphorylase [Clostridiales bacterium] diamond 492 157 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium
30718866 30718866 PRJNA885753_S_NODE_3774_length_251_cov_0.876404_g3756_i0 PRJNA885753 3774 251 0.876404 2.19977404 Bacillota bacterium 1879010 Bacteria Bacteria 173 2.6499999999999997e-48   NR MDI9495362.1 1879010 g3756 i0 100 0.99203187250996006 83 0 99.2 0 3 251 630 712 MDI9495362.1 DNA ligase D [Bacillota bacterium] diamond 249 173 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
30908674 30908674 PRJNA885753_S_NODE_3654_length_253_cov_0.866667_g3636_i0 PRJNA885753 3654 253 0.866667 2.19266751 Bacillota bacterium 1879010 Bacteria Bacteria 184 1.0099999999999995e-55   NR HHW72630.1 1879010 g3636 i0 100 0.99604743083004 84 0 99.6 0 2 253 72 155 HHW72630.1 hypothetical protein [Bacillota bacterium] diamond 252 184 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
32078558 32078558 PRJNA885753_S_NODE_3698_length_252_cov_0.871508_g3680_i0 PRJNA885753 3698 252 0.871508 2.19620016 Tissierellia bacterium 2049431 Bacteria Bacteria 104 2.9300000000000003e-26   NR MDD4088742.1 2049431 g3680 i0 78.4 0.880952380952381 74 16 88.1 0 223 2 1 74 MDD4088742.1 molybdopterin-dependent oxidoreductase [Tissierellia bacterium] diamond 222 104 1 Bacteria   Bacillati Bacillota Tissierellia       Tissierellia bacterium
32458425 32458425 PRJNA885753_S_NODE_3639_length_253_cov_0.866667_g3621_i0 PRJNA885753 3639 253 0.866667 2.19266751 Clostridiales bacterium 1898207 Bacteria Bacteria 78.6 6.84e-16   NR MDR0406337.1 1898207 g3621 i0 92.5 0.474308300395257 40 3 47.4 0 1 120 142 181 MDR0406337.1 50S ribosomal protein L6 [Clostridiales bacterium] diamond 120 78.6 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;