RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA885753" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA885753 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14889685 14889685 PRJNA885753_S_NODE_2092_length_312_cov_0.979079_g2074_i0 PRJNA885753 2092 312 0.979079 3.05472648 Methanosarcina thermophila 2210 Archaea Archaea 96.3 4.449999999999999e-23   NR WP_149761821.1 2210 g2074 i0 76.1 0.644230769230769 67 16 64.4 0 112 312 1 67 WP_149761821.1 hypothetical protein [Methanosarcina thermophila] diamond 201 96.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina thermophila
29620735 29620735 PRJNA885753_S_NODE_2730_length_282_cov_1.119617_g2712_i0 PRJNA885753 2730 282 1.119617 3.15731994 Methanosarcina 2207 Archaea Archaea 107 9.33e-27   NR WP_048046179.1 2209 g2712 i0 85.7 5.3936170212766 56 8 59.6 0 6 173 136 191 WP_048046179.1 tyrosine-type recombinase/integrase [Methanosarcina mazei] diamond 1521 107 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina mazei
31635615 31635615 PRJNA885753_S_NODE_4556_length_242_cov_0.923077_g4538_i0 PRJNA885753 4556 242 0.923077 2.23384634 Methanofollis ethanolicus 488124 Archaea Archaea 55.1 1.44e-6   NR WP_235809633.1 488124 g4538 i0 60.5 0.471074380165289 38 15 47.1 0 2 115 263 300 WP_235809633.1 lipopolysaccharide biosynthesis protein [Methanofollis ethanolicus] diamond 114 55.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanofollis Methanofollis ethanolicus
31888638 31888638 PRJNA885753_S_NODE_2157_length_308_cov_0.995745_g2139_i0 PRJNA885753 2157 308 0.995745 3.0668946 Methanosarcina sp. 2213 Archaea Archaea 130 3.9e-37   NR HHV23645.1 2213 g2139 i0 100 0.603896103896104 62 0 60.4 0 1 186 27 88 HHV23645.1 type II toxin-antitoxin system RelE/ParE family toxin [Methanosarcina sp.] diamond 186 130 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
32836552 32836552 PRJNA885753_S_NODE_4280_length_245_cov_0.906977_g4262_i0 PRJNA885753 4280 245 0.906977 2.22209365 Methanosarcina sp. 2213 Archaea Archaea 118 1.49e-29   NR HII80426.1 2213 g4262 i0 98.2 0.685714285714286 56 1 68.6 0 170 3 1 56 HII80426.1 hypothetical protein [Methanosarcina sp.] diamond 168 118 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;