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contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA884104" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA884104 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15269160 15269160 PRJNA884104_S_NODE_39212_length_330_cov_1.198444_g38469_i0 PRJNA884104 39212 330 1.198444 3.9548652 Bacteria 2 Bacteria Bacteria 152 7.85e-42   NR MBM4187711.1 2026742 g38469 i0 82 22.6090909090909 89 15 80.9 1 1 267 320 407 MBM4187711.1 NADP-dependent isocitrate dehydrogenase [Gemmatimonadota bacterium] diamond 7461 152 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
26738457 26738457 PRJNA884104_S_NODE_44241_length_313_cov_1.079167_g43498_i0 PRJNA884104 44241 313 1.079167 3.37779271 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 92.4 4.36e-20   NR HUG27709.1 2448054 g43498 i0 47.6 0.987220447284345 103 54 98.7 0 310 2 148 250 HUG27709.1 SDR family NAD(P)-dependent oxidoreductase [Gemmatimonadales bacterium] diamond 309 92.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
26897356 26897356 PRJNA884104_S_NODE_48581_length_300_cov_1.171806_g47838_i0 PRJNA884104 48581 300 1.171806 3.515418 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 46.2 0.0045   NR MBY0489199.1 2026741 g47838 i0 38.7 1.43 62 35 59 1 198 22 460 521 MBY0489199.1 response regulator [Gemmatimonadaceae bacterium] diamond 429 46.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
26936701 26936701 PRJNA884104_S_NODE_76322_length_247_cov_0.885057_g75579_i0 PRJNA884104 76322 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 43.1 0.0289   NR MEO7086209.1 2026741 g75579 i0 33.8 3.49797570850202 74 49 89.9 0 234 13 515 588 MEO7086209.1 serine/threonine-protein kinase [Gemmatimonadaceae bacterium] diamond 864 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27213290 27213290 PRJNA884104_S_NODE_63242_length_262_cov_1.455026_g62499_i0 PRJNA884104 63242 262 1.455026 3.81216812 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 106 7.45e-27   NR MDH3455568.1 2026742 g62499 i0 62.8 0.984732824427481 86 32 98.5 0 262 5 51 136 MDH3455568.1 hypoxanthine phosphoribosyltransferase [Gemmatimonadota bacterium] diamond 258 106 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28161058 28161058 PRJNA884104_S_NODE_57785_length_275_cov_1.524752_g57042_i0 PRJNA884104 57785 275 1.524752 4.193068 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 57.4 1.94e-7   NR MBE0594856.1 2448054 g57042 i0 63.2 0.414545454545455 38 14 41.5 0 10 123 183 220 MBE0594856.1 aconitate hydratase [Gemmatimonadales bacterium] diamond 114 57.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29147937 29147937 PRJNA884104_S_NODE_87429_length_233_cov_2.081250_g86686_i0 PRJNA884104 87429 233 2.08125 4.8493125 Pseudomonadati 3379134 Bacteria Bacteria 67.8 4.32e-11   NR HEY7503545.1 2448054 g86686 i0 52.5 8.18884120171674 61 28 78.5 1 231 49 253 312 HEY7503545.1 serine hydrolase domain-containing protein [Gemmatimonadales bacterium] diamond 1908 67.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29202982 29202982 PRJNA884104_S_NODE_82589_length_243_cov_0.905882_g81846_i0 PRJNA884104 82589 243 0.905882 2.20129326 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 78.6 8.07e-15   NR MFI5232859.1 2448054 g81846 i0 56.3 2.41975308641975 64 27 79 1 225 34 354 416 MFI5232859.1 ectonucleotide pyrophosphatase/phosphodiesterase [Gemmatimonadales bacterium] diamond 588 78.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29518481 29518481 PRJNA884104_S_NODE_80690_length_244_cov_0.900585_g79947_i0 PRJNA884104 80690 244 0.900585 2.1974274 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 54.7 2.16e-6   NR MDH3205933.1 2026742 g79947 i0 58.3 1.24180327868852 48 20 59 0 93 236 6 53 MDH3205933.1 acyl-CoA dehydrogenase [Gemmatimonadota bacterium] diamond 303 54.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30094765 30094765 PRJNA884104_S_NODE_40572_length_325_cov_1.305556_g39829_i0 PRJNA884104 40572 325 1.305556 4.243057 Pseudomonadati 3379134 Bacteria Bacteria 100 3.04e-22   NR RMH16708.1 2026742 g39829 i0 50 3.17538461538462 86 43 79.4 0 322 65 75 160 RMH16708.1 MAG: class A beta-lactamase-related serine hydrolase [Gemmatimonadota bacterium] diamond 1032 101 0.99009900990099 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30537263 30537263 PRJNA884104_S_NODE_33273_length_355_cov_1.904255_g32530_i0 PRJNA884104 33273 355 1.904255 6.76010525 Pseudomonadati 3379134 Bacteria Bacteria 50.8 1.97e-4   NR MBB30379.1 2026742 g32530 i0 33.3 2.39154929577465 96 53 79.4 4 27 308 1406 1492 MBB30379.1 hypothetical protein [Gemmatimonadota bacterium] diamond 849 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30813640 30813640 PRJNA884104_S_NODE_16074_length_501_cov_2.869159_g15336_i0 PRJNA884104 16074 501 2.869159 14.37448659 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 198 9.54e-62   NR MDH3455568.1 2026742 g15336 i0 59.1 0.952095808383233 159 65 95.2 0 7 483 13 171 MDH3455568.1 hypoxanthine phosphoribosyltransferase [Gemmatimonadota bacterium] diamond 477 198 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30916596 30916596 PRJNA884104_S_NODE_55814_length_280_cov_1.115942_g55071_i0 PRJNA884104 55814 280 1.115942 3.1246376 Pseudomonadati 3379134 Bacteria Bacteria 48.1 6.98e-4   NR HJX86367.1 2448054 g55071 i0 35.8 2.59285714285714 81 46 82.5 4 258 28 256 334 HJX86367.1 hypothetical protein [Gemmatimonadales bacterium] diamond 726 48.5 0.991752577319588 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31011156 31011156 PRJNA884104_S_NODE_72194_length_249_cov_0.875000_g71451_i0 PRJNA884104 72194 249 0.875 2.17875 FCB group 1783270 Bacteria Bacteria 108 1.9e-25   NR MCC6771645.1 2026741 g71451 i0 66.7 15.9759036144578 78 26 94 0 248 15 66 143 MCC6771645.1 B12-binding domain-containing radical SAM protein [Gemmatimonadaceae bacterium] diamond 3978 109 0.990825688073395 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31129290 31129290 PRJNA884104_S_NODE_20995_length_441_cov_0.847826_g20252_i0 PRJNA884104 20995 441 0.847826 3.73891266 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 90.9 3.99e-18   NR MBT5328897.1 2026742 g20252 i0 42.2 4.51020408163265 135 70 86.4 4 384 4 42 176 MBT5328897.1 hypothetical protein [Gemmatimonadota bacterium] diamond 1989 90.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31192478 31192478 PRJNA884104_S_NODE_48235_length_301_cov_1.135965_g47492_i0 PRJNA884104 48235 301 1.135965 3.41925465 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.5 0.0388   NR HEU4699358.1 2448054 g47492 i0 49 0.508305647840532 51 25 49.8 1 152 3 623 673 HEU4699358.1 ATP-binding protein [Gemmatimonadales bacterium] diamond 153 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31422166 31422166 PRJNA884104_S_NODE_82416_length_243_cov_0.905882_g81673_i0 PRJNA884104 82416 243 0.905882 2.20129326 FCB group 1783270 Bacteria Bacteria 109 1.61e-28   NR HWA55626.1 2448054 g81673 i0 62.8 16.8888888888889 78 29 96.3 0 234 1 32 109 HWA55626.1 hypothetical protein [Gemmatimonadales bacterium] diamond 4104 110 0.990909090909091 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31453925 31453925 PRJNA884104_S_NODE_65276_length_258_cov_0.870270_g64533_i0 PRJNA884104 65276 258 0.87027 2.2452966 Pseudomonadati 3379134 Bacteria Bacteria 81.3 1.15e-15   NR HEX2451855.1 2448054 g64533 i0 52.1 3.36046511627907 73 34 84.9 1 2 220 240 311 HEX2451855.1 M20 family peptidase [Gemmatimonadales bacterium] diamond 867 81.6 0.996323529411765 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32110193 32110193 PRJNA884104_S_NODE_27318_length_389_cov_1.218354_g26575_i0 PRJNA884104 27318 389 1.218354 4.73939706 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 171 3.54e-48   NR HEV2148171.1 3047548 g26575 i0 66.1 9.76349614395887 127 43 97.9 0 383 3 59 185 HEV2148171.1 M28 family metallopeptidase [Longimicrobiaceae bacterium] diamond 3798 171 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
32268578 32268578 PRJNA884104_S_NODE_57438_length_276_cov_1.137931_g56695_i0 PRJNA884104 57438 276 1.137931 3.14068956 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 75.1 2.28e-13   NR MCH7475869.1 2026742 g56695 i0 46 4.72826086956522 87 46 94.6 1 2 262 482 567 MCH7475869.1 acyl-CoA dehydrogenase family protein [Gemmatimonadota bacterium] diamond 1305 75.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32458386 32458386 PRJNA884104_S_NODE_44119_length_313_cov_1.508333_g43376_i0 PRJNA884104 44119 313 1.508333 4.72108229 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 110 4.47e-26   NR MCY3773322.1 2026742 g43376 i0 46.4 5.36741214057508 112 52 99.7 2 312 1 214 325 MCY3773322.1 dipeptidase [Gemmatimonadota bacterium] diamond 1680 110 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32647320 32647320 PRJNA884104_S_NODE_18680_length_466_cov_2.183206_g17937_i0 PRJNA884104 18680 466 2.183206 10.17373996 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 156 2.76e-41   NR NNE08319.1 2026742 g17937 i0 51.9 0.869098712446352 135 58 86.9 2 464 60 199 326 NNE08319.1 T9SS type A sorting domain-containing protein [Gemmatimonadota bacterium] diamond 405 156 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;