RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA883229" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA883229 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26873777 26873777 PRJNA883229_P_NODE_6241_length_285_cov_1.231132_g6195_i0 PRJNA883229 6241 285 1.231132 3.5087262 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 96.3 5.64e-21   NR XP_059009838.1 9666 g6195 i0 49.5 4.92631578947368 91 42 92.6 2 265 2 302 391 XP_059009838.1 cytochrome P450 3A12 isoform X2 [Mustela lutreola] diamond 1404 97.1 0.991761071060762 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela lutreola
30403368 30403368 PRJNA883229_P_NODE_6353_length_283_cov_1.838095_g6307_i0 PRJNA883229 6353 283 1.838095 5.20180885 Staurois parvus 386267 Chordata Chordata 44.7 0.00219   NR CAI9618612.1 386267 g6307 i0 38.8 0.710247349823322 67 28 62.5 3 239 63 31 92 CAI9618612.1 unnamed protein product [Staurois parvus] diamond 201 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;