RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA881257" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA881257 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28003096 28003096 PRJNA881257_P_NODE_17165_length_164_cov_0.904348_g16920_i0 PRJNA881257 17165 164 0.904348 1.48313072 Labilithrix sp. 1971228 Bacteria Bacteria 75.9 5.03e-15   NR MFO0739377.1 1971228 g16920 i0 77.8 0.98780487804878 54 12 98.8 0 3 164 7 60 MFO0739377.1 type II secretion system protein [Labilithrix sp.] diamond 162 75.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
29739176 29739176 PRJNA881257_P_NODE_12490_length_183_cov_0.865672_g12245_i0 PRJNA881257 12490 183 0.865672 1.58417976 Myxococcales bacterium 2026763 Bacteria Bacteria 42 0.0315   NR NMB77017.1 2026763 g12245 i0 45.6 0.934426229508197 57 27 86.9 2 21 179 633 689 NMB77017.1 hypothetical protein [Myxococcales bacterium] diamond 171 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
30023905 30023905 PRJNA881257_P_NODE_16371_length_165_cov_0.896552_g16126_i0 PRJNA881257 16371 165 0.896552 1.4793108 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.5 6.91e-9   NR MBP1712011.1 2026735 g16126 i0 76.7 0.545454545454545 30 7 54.5 0 92 3 18 47 MBP1712011.1 methylase [Deltaproteobacteria bacterium] diamond 90 58.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30055169 30055169 PRJNA881257_P_NODE_18231_length_162_cov_0.920354_g17986_i0 PRJNA881257 18231 162 0.920354 1.49097348 Polyangiaceae bacterium 2268199 Bacteria Bacteria 50.1 4.79e-6   NR MEO8874156.1 2268199 g17986 i0 64.9 0.685185185185185 37 13 68.5 0 112 2 3 39 MEO8874156.1 hypothetical protein [Polyangiaceae bacterium] diamond 111 50.1 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30529175 30529175 PRJNA881257_P_NODE_15593_length_167_cov_0.881356_g15348_i0 PRJNA881257 15593 167 0.881356 1.47186452 Kofleriaceae bacterium 2212474 Bacteria Bacteria 58.5 5.04e-9   NR HVK86798.1 2212474 g15348 i0 65.2 0.826347305389222 46 16 82.6 0 140 3 4 49 HVK86798.1 CBS domain-containing protein [Kofleriaceae bacterium] diamond 138 58.5 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30655559 30655559 PRJNA881257_P_NODE_16093_length_166_cov_0.888889_g15848_i0 PRJNA881257 16093 166 0.888889 1.47555574 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 65.9 4.18e-11   NR MCJ7546065.1 2026735 g15848 i0 48.1 0.975903614457831 54 28 97.6 0 3 164 190 243 MCJ7546065.1 FkbM family methyltransferase [Deltaproteobacteria bacterium] diamond 162 65.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;