RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA881257" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA881257 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30118388 30118388 PRJNA881257_P_NODE_12632_length_181_cov_1.575758_g12387_i0 PRJNA881257 12632 181 1.575758 2.85212198 Truepera radiovictrix 332249 Bacteria Bacteria 70.1 3.15e-12   NR WP_013178670.1 332249 g12387 i0 60.3 0.961325966850829 58 23 96.1 0 3 176 216 273 WP_013178670.1 FAD-dependent oxidoreductase [Truepera radiovictrix] diamond 174 70.1 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
32237044 32237044 PRJNA881257_P_NODE_17498_length_163_cov_0.912281_g17253_i0 PRJNA881257 17498 163 0.912281 1.48701803 Fretibacterium sp. OH122 2699746 Bacteria Bacteria 108 4.35e-26   NR WP_124888570.1 2491047 g17253 i0 92.6 1.98773006134969 54 4 99.4 0 1 162 125 178 WP_124888570.1 glycine/sarcosine/betaine reductase component B subunit [Fretibacterium sp. OH1220_COT-178] diamond 324 108 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium sp. OH1220_COT-178

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;