RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA879314" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA879314 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26611957 26611957 PRJNA879314_P_NODE_4561_length_253_cov_0.866667_g4511_i0 PRJNA879314 4561 253 0.866667 2.19266751 Pythium oligandrum 41045 SAR_Eukaryotes SAR_Eukaryotes 50.8 6.1e-5   NR TMW63474.1 41045 g4511 i0 39.7 0.687747035573123 58 35 68.8 0 19 192 130 187 TMW63474.1 hypothetical protein Poli38472_002415 [Pythium oligandrum] diamond 174 50.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
26620113 26620113 PRJNA879314_P_NODE_11001_length_242_cov_0.923077_g10951_i0 PRJNA879314 11001 242 0.923077 2.23384634 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 52.8 1e-5   NR KAF0699222.1 120398 g10951 i0 34.1 2.05785123966942 82 52 99.2 2 241 2 169 250 KAF0699222.1 hypothetical protein As57867_010148 [Aphanomyces stellatus] diamond 498 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
28981876 28981876 PRJNA879314_P_NODE_3368_length_277_cov_1.250000_g3318_i0 PRJNA879314 3368 277 1.25 3.4625 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.014   NR CAI5730517.1 162125 g3318 i0 37.3 0.552346570397112 51 32 55.2 0 83 235 35 85 CAI5730517.1 unnamed protein product [Hyaloperonospora brassicae] diamond 153 43.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;