RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA879314" and tax_phylum = "Candidatus Shapironibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Shapironibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA879314 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9785702 9785702 PRJNA879314_P_NODE_3688_length_269_cov_1.591837_g3638_i0 PRJNA879314 3688 269 1.591837 4.28204153 Candidatus Shapirobacteria bacterium CG_4_9_14_ 2053613 Bacteria Bacteria 161 2.64e-45   NR PJC28350.1 1974478 g3638 i0 79.8 2.97769516728625 89 18 99.3 0 268 2 213 301 PJC28350.1 MAG: cysteine--tRNA ligase [Candidatus Shapirobacteria bacterium CG_4_9_14_0_2_um_filter_39_11] diamond 801 161 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium CG_4_9_14_0_2_um_filter_39_11
29171246 29171246 PRJNA879314_P_NODE_7589_length_248_cov_0.891429_g7539_i0 PRJNA879314 7589 248 0.891429 2.21074392 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 92 2.11e-20   NR MBP6867217.1 2053613 g7539 i0 62.5 0.967741935483871 80 27 95.6 3 245 9 90 167 MBP6867217.1 hypothetical protein [Candidatus Shapirobacteria bacterium] diamond 240 92 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium
29360610 29360610 PRJNA879314_P_NODE_9629_length_245_cov_0.883721_g9579_i0 PRJNA879314 9629 245 0.883721 2.16511645 Candidatus Shapirobacteria bacterium 2053613 Bacteria Bacteria 69.3 9.06e-12   NR MFA5025981.1 2053613 g9579 i0 82.1 0.477551020408163 39 7 47.8 0 123 239 1 39 MFA5025981.1 EamA family transporter [Candidatus Shapirobacteria bacterium] diamond 117 69.3 1 Bacteria Bacteria candidate phyla   Candidatus Shapironibacteriota         Candidatus Shapirobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;