RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA879221" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA879221 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28255333 28255333 PRJNA879221_P_NODE_51386_length_248_cov_0.880000_g51246_i0 PRJNA879221 51386 248 0.88 2.1824 Tetrahymena malaccensis 5901 SAR_Eukaryotes SAR_Eukaryotes 59.3 2.04e-8   NR KAL4451154.1 5901 g51246 i0 100 0.314516129032258 26 0 31.5 0 117 194 3 28 KAL4451154.1 hypothetical protein ABPG74_021476 [Tetrahymena malaccensis] diamond 78 59.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
29802495 29802495 PRJNA879221_P_NODE_52831_length_247_cov_0.885057_g52691_i0 PRJNA879221 52831 247 0.885057 2.18609079 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 90.1 7.83e-19   NR CDW73391.1 5949 g52691 i0 52.5 0.97165991902834 80 38 97.2 0 6 245 87 166 CDW73391.1 exodeoxyribonuclease iii family protein [Stylonychia lemnae] diamond 240 90.1 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
30813534 30813534 PRJNA879221_P_NODE_54094_length_247_cov_0.885057_g53954_i0 PRJNA879221 54094 247 0.885057 2.18609079 Tetrahymena utriculariae 2486642 SAR_Eukaryotes SAR_Eukaryotes 74.7 2.14e-13   NR KAL4466677.1 2486642 g53954 i0 65.6 0.777327935222672 64 22 77.7 0 24 215 78 141 KAL4466677.1 hypothetical protein ABPG72_016794 [Tetrahymena utriculariae] diamond 192 74.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena utriculariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;