RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA879067" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA879067 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11057485 11057485 PRJNA879067_P_NODE_104429_length_249_cov_1.750000_g100943_i0 PRJNA879067 104429 249 1.75 4.3575 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 140 9.2e-39   NR KAF4681719.1 32597 g100943 i0 82.1 48.6746987951807 78 14 94 0 14 247 82 159 KAF4681719.1 hypothetical protein FOZ63_002950, partial [Perkinsus olseni] diamond 12120 141 0.99290780141844 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
31706797 31706797 PRJNA879067_P_NODE_84797_length_319_cov_1.410569_g81311_i0 PRJNA879067 84797 319 1.410569 4.49971511 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 48.9 6.43e-4   NR KAF4742008.1 32597 g81311 i0 72.4 7.86206896551724 29 8 27.3 0 186 100 1 29 KAF4742008.1 hypothetical protein FOZ62_000616 [Perkinsus olseni] diamond 2508 49.3 0.991886409736308 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;