RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA879067" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879067 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28223699 28223699 PRJNA879067_P_NODE_62626_length_432_cov_1.807799_g59141_i0 PRJNA879067 62626 432 1.807799 7.80969168 Mesorhabditis spiculigera 96644 Nematoda Nematoda 118 9.63e-32   NR CAJ0559171.1 96644 g59141 i0 71.3 0.652777777777778 94 20 64.6 2 368 90 1 88 CAJ0559171.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 282 118 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
28508078 28508078 PRJNA879067_P_NODE_54187_length_491_cov_4.090909_g50702_i0 PRJNA879067 54187 491 4.090909 20.08636319 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 107 2.32e-26   NR CAD5224984.1 6326 g50702 i0 47.7 1.60081466395112 130 63 77.6 3 386 6 4 131 CAD5224984.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 786 107 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
28768554 28768554 PRJNA879067_P_NODE_32047_length_730_cov_2.141553_g28700_i0 PRJNA879067 32047 730 2.141553 15.6333369 Nematoda 6231 Nematoda Nematoda 48.5 0.015   NR VDK17708.1 6269 g28700 i0 38.5 0.908219178082192 52 29 20.1 1 167 313 209 260 VDK17708.1 unnamed protein product [Anisakis simplex] diamond 663 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
30971674 30971674 PRJNA879067_P_NODE_41714_length_604_cov_2.491525_g38261_i0 PRJNA879067 41714 604 2.491525 15.048811 Anisakis simplex 6269 Nematoda Nematoda 70.9 1.85e-10   NR VDK42199.1 6269 g38261 i0 45.9 0.605960264900662 61 33 30.3 0 3 185 94 154 VDK42199.1 unnamed protein product [Anisakis simplex] diamond 366 70.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
31137241 31137241 PRJNA879067_P_NODE_54535_length_488_cov_7.296386_g51050_i0 PRJNA879067 54535 488 7.296386 35.60636368 Trichinella 6333 Nematoda Nematoda 57.4 3.5e-6   NR KRY46971.1 45882 g51050 i0 50.9 0.700819672131147 57 28 35 0 11 181 459 515 KRY46971.1 Solute carrier family 2, facilitated glucose transporter member 1, partial [Trichinella britovi] diamond 342 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi
32899281 32899281 PRJNA879067_P_NODE_106480_length_247_cov_0.885057_g102994_i0 PRJNA879067 106480 247 0.885057 2.18609079 Haemonchus contortus 6289 Nematoda Nematoda 156 3.25e-42   NR XGW17758.1 6289 g102994 i0 100 2.95141700404858 81 0 98.4 0 245 3 741 821 XGW17758.1 hypothetical protein V3C99_002390 [Haemonchus contortus] diamond 729 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;