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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA879067" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879067 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9783211 9783211 PRJNA879067_P_NODE_51888_length_509_cov_5.133028_g48404_i0 PRJNA879067 51888 509 5.133028 26.12711252 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 284 2.89e-89   NR MCE2942190.1 2026742 g48404 i0 87.5 2.9705304518664 168 21 99 0 6 509 199 366 MCE2942190.1 Ig-like domain-containing protein [Gemmatimonadota bacterium] diamond 1512 284 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
9783603 9783603 PRJNA879067_P_NODE_65788_length_412_cov_2.061947_g62303_i0 PRJNA879067 65788 412 2.061947 8.49522164 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 267 1.14e-80   NR MEE8596102.1 2026742 g62303 i0 100 0.990291262135922 136 0 99 0 412 5 966 1101 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 408 267 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28421532 28421532 PRJNA879067_P_NODE_103826_length_250_cov_1.271186_g100340_i0 PRJNA879067 103826 250 1.271186 3.177965 FCB group 1783270 Bacteria Bacteria 100 2.02e-22   NR WP_331126789.1 2029185 g100340 i0 56.6 5.88 83 36 99.6 0 2 250 3100 3182 WP_331126789.1 methylaspartate mutase subunit E [Longimicrobium sp.] diamond 1470 100 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
28950303 28950303 PRJNA879067_P_NODE_82828_length_327_cov_2.094488_g79342_i0 PRJNA879067 82828 327 2.094488 6.84897576 Roseisolibacter agri 2014610 Bacteria Bacteria 162 8.51e-44   NR WP_284351566.1 2014610 g79342 i0 85.3 0.935779816513762 102 15 93.6 0 22 327 94 195 WP_284351566.1 TonB-dependent receptor [Roseisolibacter agri] diamond 306 162 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
29171204 29171204 PRJNA879067_P_NODE_54669_length_487_cov_8.584541_g51184_i0 PRJNA879067 54669 487 8.584541 41.80671467 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 45.1 0.0346   NR MCU0633675.1 2026741 g51184 i0 34.7 0.4435318275154 72 37 44.4 2 137 352 100 161 MCU0633675.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 216 45.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32236987 32236987 PRJNA879067_P_NODE_50718_length_519_cov_1.715247_g47236_i0 PRJNA879067 50718 519 1.715247 8.90213193 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 282 1.1999999999999998e-88   NR MFN0099248.1 2026741 g47236 i0 91.9 0.930635838150289 161 13 93.1 0 6 488 233 393 MFN0099248.1 protein kinase domain-containing protein [Gemmatimonadaceae bacterium] diamond 483 282 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32489901 32489901 PRJNA879067_P_NODE_109239_length_243_cov_0.905882_g105753_i0 PRJNA879067 109239 243 0.905882 2.20129326 Longimicrobium sp. 2029185 Bacteria Bacteria 115 1.71e-28   NR HYW13966.1 2029185 g105753 i0 70 3.95061728395062 80 24 98.8 0 241 2 263 342 HYW13966.1 hypothetical protein [Longimicrobium sp.] diamond 960 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;