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contig_metadata

22 rows where analysis = "diamond", bioproject = "PRJNA879067" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 22 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA879067 · 22 ✖

analysis 1

  • diamond · 22 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21258088 21258088 PRJNA879067_P_NODE_77017_length_352_cov_2.501792_g73531_i0 PRJNA879067 77017 352 2.501792 8.80630784 Mammalia 40674 Chordata Chordata 55.5 4.51e-7   NR XP_043843908.1 33562 g73531 i0 51.7 3.46875 58 26 49.4 1 48 221 24 79 XP_043843908.1 40S ribosomal protein S25-like [Dromiciops gliroides] diamond 1221 55.8 0.99462365591397806 Eukaryota Opisthokonta Metazoa Chordata Mammalia Microbiotheria Microbiotheriidae Dromiciops Dromiciops gliroides
27560621 27560621 PRJNA879067_P_NODE_109724_length_242_cov_2.692308_g106238_i0 PRJNA879067 109724 242 2.692308 6.51538536 Crocuta crocuta 9678 Chordata Chordata 48.1 1.49e-4   NR KAF0870898.1 9678 g106238 i0 43.1 0.71900826446281 58 31 70.7 2 42 212 50 106 KAF0870898.1 LORF2 protein, partial [Crocuta crocuta] diamond 174 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
27719115 27719115 PRJNA879067_P_NODE_82984_length_326_cov_3.723320_g79498_i0 PRJNA879067 82984 326 3.72332 12.1380232 Staurois parvus 386267 Chordata Chordata 108 1.94e-28   NR CAI9604451.1 386267 g79498 i0 66.7 1.62883435582822 81 27 74.5 0 298 56 1 81 CAI9604451.1 unnamed protein product, partial [Staurois parvus] diamond 531 108 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27750471 27750471 PRJNA879067_P_NODE_103864_length_250_cov_0.870056_g100378_i0 PRJNA879067 103864 250 0.870056 2.17514 Marmota monax 9995 Chordata Chordata 72.4 1.13e-12   NR KAF7462032.1 9995 g100378 i0 43.7 1.704 71 40 85.2 0 22 234 209 279 KAF7462032.1 hypothetical protein GHT09_013259 [Marmota monax] diamond 426 72.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota monax
27750483 27750483 PRJNA879067_P_NODE_39924_length_623_cov_20.549091_g36479_i0 PRJNA879067 39924 623 20.549091 128.02083693 Dasypus novemcinctus 9361 Chordata Chordata 46.6 0.0422   NR XP_058141964.1 9361 g36479 i0 63.2 0.36597110754414103 38 14 18.3 0 167 280 435 472 XP_058141964.1 merlin-like isoform X2 [Dasypus novemcinctus] diamond 228 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Cingulata Dasypodidae Dasypus Dasypus novemcinctus
27876491 27876491 PRJNA879067_P_NODE_110045_length_242_cov_0.911243_g106559_i0 PRJNA879067 110045 242 0.911243 2.20520806 Leucoraja erinaceus 7782 Chordata Chordata 60.5 1.97e-8   NR XP_055511116.1 7782 g106559 i0 50 12.1611570247934 60 30 74.4 0 194 15 246 305 XP_055511116.1 uncharacterized protein LOC129709027 [Leucoraja erinaceus] diamond 2943 60.8 0.995065789473684 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
28231595 28231595 PRJNA879067_P_NODE_105626_length_248_cov_0.880000_g102140_i0 PRJNA879067 105626 248 0.88 2.1824 Metazoa 33208 Chordata Chordata 49.7 1.41e-4   NR XP_067971183.1 7769 g102140 i0 38.3 3.66532258064516 60 31 72.6 1 246 67 407 460 XP_067971183.1 uncharacterized protein [Myxine glutinosa] diamond 909 50.1 0.992015968063872 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
28508082 28508082 PRJNA879067_P_NODE_65047_length_416_cov_6.408163_g61562_i0 PRJNA879067 65047 416 6.408163 26.65795808 Engystomops pustulosus 76066 Chordata Chordata 46.6 9.96e-4   NR KAG8536220.1 76066 g61562 i0 67.9 0.605769230769231 28 9 20.2 0 320 403 43 70 KAG8536220.1 hypothetical protein GDO81_026873 [Engystomops pustulosus] diamond 252 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
29139750 29139750 PRJNA879067_P_NODE_105589_length_248_cov_0.880000_g102103_i0 PRJNA879067 105589 248 0.88 2.1824 Muntiacus reevesi 9886 Chordata Chordata 44.7 0.00259   NR KAB0379141.1 9886 g102103 i0 80 0.362903225806452 30 2 35.1 2 88 174 93 119 KAB0379141.1 hypothetical protein FD755_010719, partial [Muntiacus reevesi] diamond 90 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi
29265604 29265604 PRJNA879067_P_NODE_26109_length_843_cov_4.500000_g22896_i0 PRJNA879067 26109 843 4.5 37.935 Charadrius vociferus 50402 Chordata Chordata 111 2.38e-23   NR XP_009883999.1 50402 g22896 i0 60.6 0.352313167259786 99 39 35.2 0 786 490 242 340 XP_009883999.1 PREDICTED: uncharacterized protein LOC104287046, partial [Charadrius vociferus] diamond 297 111 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Charadriidae Charadrius Charadrius vociferus
30149832 30149832 PRJNA879067_P_NODE_11772_length_1421_cov_3.280415_g9472_i0 PRJNA879067 11772 1421 3.280415 46.61469715 Mobula hypostoma 723540 Chordata Chordata 56.6 2.17e-4   NR XP_062911967.1 723540 g9472 i0 28.6 0.570021111893033 147 89 29.8 4 995 1417 323 459 XP_062911967.1 ribosomal protein S6 kinase alpha-5-like isoform X3 [Mobula hypostoma] diamond 810 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Myliobatidae Mobula Mobula hypostoma
30221158 30221158 PRJNA879067_P_NODE_79632_length_341_cov_1.048507_g76146_i0 PRJNA879067 79632 341 1.048507 3.57540887 Metazoa 33208 Chordata Chordata 67.8 8.71e-11   NR XP_038452574.1 9615 g76146 i0 45.1 5.48973607038123 71 39 62.5 0 311 99 181 251 XP_038452574.1 LOW QUALITY PROTEIN: 40S ribosomal protein S3a-like isoform X4 [Canis lupus familiaris] diamond 1872 68.2 0.994134897360704 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
30411182 30411182 PRJNA879067_P_NODE_102793_length_251_cov_3.174157_g99307_i0 PRJNA879067 102793 251 3.174157 7.96713407 Mammalia 40674 Chordata Chordata 57.8 2.04e-7   NR XP_060046634.1 9365 g99307 i0 50.7 4.48207171314741 75 37 89.6 0 244 20 173 247 XP_060046634.1 potassium voltage-gated channel subfamily S member 1 [Erinaceus europaeus] diamond 1125 58.2 0.993127147766323 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Erinaceidae Erinaceus Erinaceus europaeus
30474193 30474193 PRJNA879067_P_NODE_65593_length_413_cov_2.529412_g62108_i0 PRJNA879067 65593 413 2.529412 10.44647156 Carnivora 33554 Chordata Chordata 58.5 4.4e-7   NR KAF0875183.1 9678 g62108 i0 83.9 0.450363196125908 31 5 22.5 0 321 413 185 215 KAF0875183.1 NDKB kinase, partial [Crocuta crocuta] diamond 186 58.9 0.99320882852292 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
31043117 31043117 PRJNA879067_P_NODE_112015_length_226_cov_3.117647_g108529_i0 PRJNA879067 112015 226 3.117647 7.04588222 Opisthokonta 33154 Chordata Chordata 47.8 4.79e-4   NR XP_045441905.1 59472 g108529 i0 33.9 4.64601769911504 59 39 78.3 0 184 8 168 226 XP_045441905.1 LOW QUALITY PROTEIN: cyclin-Y-like protein 1 [Pipistrellus kuhlii] diamond 1050 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Pipistrellus Pipistrellus kuhlii
31074439 31074439 PRJNA879067_P_NODE_72615_length_374_cov_2.000000_g69130_i0 PRJNA879067 72615 374 2 7.48 Anura 8342 Chordata Chordata 55.5 5.6e-6   NR CAK8621194.1 30338 g69130 i0 26.5 1.92513368983957 113 77 85.8 2 332 12 343 455 CAK8621194.1 LINE-1 retrotransposable element ORF2 protein [Bufotes viridis] diamond 720 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31097769 31097769 PRJNA879067_P_NODE_110415_length_242_cov_0.911243_g106929_i0 PRJNA879067 110415 242 0.911243 2.20520806 Polypterus senegalus 55291 Chordata Chordata 81.3 1.02e-15   NR KAG2463522.1 55291 g106929 i0 55 21.8181818181818 80 36 99.2 0 241 2 563 642 KAG2463522.1 IFT56 protein, partial [Polypterus senegalus] diamond 5280 82 0.991463414634146 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31192320 31192320 PRJNA879067_P_NODE_103975_length_250_cov_0.870056_g100489_i0 PRJNA879067 103975 250 0.870056 2.17514 Mus musculus 10090 Chordata Chordata 57.8 1.69e-8   NR EDL01021.1 10090 g100489 i0 46.7 0.72 60 32 72 0 212 33 52 111 EDL01021.1 mCG1026770 [Mus musculus] diamond 180 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31192327 31192327 PRJNA879067_P_NODE_31575_length_738_cov_4.039098_g28231_i0 PRJNA879067 31575 738 4.039098 29.80854324 Marmota monax 9995 Chordata Chordata 60.1 3.41e-7   NR VTJ83332.1 9995 g28231 i0 75.7 0.963414634146341 37 9 15 0 112 2 37 73 VTJ83332.1 Hypothetical predicted protein [Marmota monax] diamond 711 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota monax
31485612 31485612 PRJNA879067_P_NODE_41576_length_605_cov_3.682331_g38124_i0 PRJNA879067 41576 605 3.682331 22.27810255 Metazoa 33208 Chordata Chordata 55.5 4.34e-5   NR XP_032084909.1 35005 g38124 i0 25.8 2.83140495867769 186 118 86.3 6 590 69 88 265 XP_032084909.1 ubiquitin-protein ligase E3B [Thamnophis elegans] diamond 1713 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Colubridae Thamnophis Thamnophis elegans
32331912 32331912 PRJNA879067_P_NODE_54879_length_486_cov_2.523002_g51394_i0 PRJNA879067 54879 486 2.523002 12.26178972 Petromyzon marinus 7757 Chordata Chordata 73.9 1.61e-13   NR XP_032822869.1 7757 g51394 i0 53.2 1.45679012345679 47 22 29 0 11 151 79 125 XP_032822869.1 brain protein I3-like isoform X1 [Petromyzon marinus] diamond 708 73.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
32616068 32616068 PRJNA879067_P_NODE_40900_length_612_cov_24.185529_g37448_i0 PRJNA879067 40900 612 24.185529 148.01543748 Aptenodytes forsteri 9233 Chordata Chordata 83.2 4.57e-15   NR XP_019327576.1 9233 g37448 i0 51 0.5 102 34 42.2 3 175 432 4 105 XP_019327576.1 PREDICTED: LOW QUALITY PROTEIN: cancer-associated gene 1 protein [Aptenodytes forsteri] diamond 306 83.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Sphenisciformes Spheniscidae Aptenodytes Aptenodytes forsteri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;