RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA879067" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA879067 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22532783 22532783 PRJNA879067_P_NODE_77358_length_351_cov_1.100719_g73872_i0 PRJNA879067 77358 351 1.100719 3.86352369 Pseudomonadati 3379134 Bacteria Bacteria 154 3.2299999999999993e-46   NR MCH3765100.1 195 g73872 i0 97.3 1.24786324786325 73 2 62.4 0 347 129 14 86 MCH3765100.1 hypothetical protein [Campylobacter coli] diamond 438 154 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
26873763 26873763 PRJNA879067_P_NODE_102321_length_253_cov_3.372222_g98835_i0 PRJNA879067 102321 253 3.372222 8.53172166 Bacteria 2 Bacteria Bacteria 44.7 0.00247   NR MDU9799813.1 210 g98835 i0 84.6 0.924901185770751 26 4 30.8 0 158 81 14 39 MDU9799813.1 hypothetical protein [Helicobacter pylori] diamond 234 44.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28350130 28350130 PRJNA879067_P_NODE_72506_length_374_cov_6.289037_g69021_i0 PRJNA879067 72506 374 6.289037 23.52099838 Poseidonibacter antarcticus 2478538 Bacteria Bacteria 90.5 1.69e-19   NR WP_162984614.1 2478538 g69021 i0 36.9 1.8048128342246 122 74 97.9 1 372 7 45 163 WP_162984614.1 GAG-pre-integrase domain-containing protein, partial [Poseidonibacter antarcticus] diamond 675 90.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Poseidonibacter Poseidonibacter antarcticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;