RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA879067" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA879067 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27852914 27852914 PRJNA879067_P_NODE_33624_length_706_cov_3.584518_g30253_i0 PRJNA879067 33624 706 3.584518 25.30669708 Cylindrotheca 2852 SAR_Eukaryotes SAR_Eukaryotes 115 1.95e-25   NR CAJ1922819.1 2856 g30253 i0 36.7 1.84844192634561 218 96 90.9 6 701 60 15 194 CAJ1922819.1 unnamed protein product [Cylindrotheca closterium] diamond 1305 115 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Cylindrotheca Cylindrotheca closterium
28792016 28792016 PRJNA879067_P_NODE_54447_length_489_cov_4.127404_g50962_i0 PRJNA879067 54447 489 4.127404 20.18300556 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 164 2.5799999999999998e-43   NR CAB9506320.1 568900 g50962 i0 93.2 0.539877300613497 88 6 54 0 2 265 1381 1468 CAB9506320.1 chelatase subunit ChlH, chloroplastic [Seminavis robusta] diamond 264 164 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
32268434 32268434 PRJNA879067_P_NODE_89598_length_300_cov_1.647577_g86112_i0 PRJNA879067 89598 300 1.647577 4.942731 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 53.1 1.57e-5   NR GKZ00394.1 2872254 g86112 i0 42.6 0.61 61 34 61 1 269 87 540 599 GKZ00394.1 hypothetical protein MPSEU_000992400 [Mayamaea pseudoterrestris] diamond 183 53.1 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;