RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA870096" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA870096 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12329036 12329036 PRJNA870096_S_NODE_23530_length_372_cov_2.604863_g21867_i0 PRJNA870096 23530 372 2.604863 9.69009036 root 1 Root_unresolved Root_unresolved 105 2.19e-23   NR AKT93973.1 5778 g21867 i0 53.9 2.85483870967742 89 39 70.2 1 262 2 9 97 AKT93973.1 NADH dehydrogenase subunit 11 [Vermamoeba vermiformis] diamond 1062 105 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19976473 19976473 PRJNA870096_S_NODE_21996_length_385_cov_11.385965_g20336_i0 PRJNA870096 21996 385 11.385965 43.83596525 Amoeba proteus 5775 Tubulinea other_Eukaryota 189 5.6499999999999985e-56   NR AAP88974.1 5775 g20336 i0 78.4 0.903896103896104 116 25 90.4 0 2 349 275 390 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 348 189 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
26770365 26770365 PRJNA870096_S_NODE_84361_length_191_cov_1.945946_g82697_i0 PRJNA870096 84361 191 1.945946 3.71675686 Amoeba proteus 5775 Tubulinea other_Eukaryota 83.6 1.95e-17   NR AKN09689.1 5775 g82697 i0 61.9 0.989528795811518 63 24 99 0 190 2 185 247 AKN09689.1 Tom20 [Amoeba proteus] diamond 189 83.6 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31445650 31445650 PRJNA870096_S_NODE_129056_length_157_cov_1.263158_g127392_i0 PRJNA870096 129056 157 1.263158 1.98315806 Amoeba proteus 5775 Tubulinea other_Eukaryota 72.4 2.19e-13   NR BAF75060.1 5775 g127392 i0 64 0.955414012738854 50 18 95.5 0 4 153 81 130 BAF75060.1 aquaporin [Amoeba proteus] diamond 150 72.4 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;