RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA870096" and tax_phylum = "Negarnaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA870096 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29739044 29739044 PRJNA870096_S_NODE_136970_length_153_cov_0.872727_g135306_i0 PRJNA870096 136970 153 0.872727 1.33527231 Spring viraemia of carp virus 696863 Viruses Viruses 70.9 2.62e-13   NR QHX41416.1 696863 g135306 i0 60 3.92156862745098 50 20 98 0 3 152 104 153 QHX41416.1 glycoprotein, partial [Sprivivirus cyprinus] diamond 600 70.9 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
31951696 31951696 PRJNA870096_S_NODE_126097_length_159_cov_1.017241_g124433_i0 PRJNA870096 126097 159 1.017241 1.61741319 Spring viraemia of carp virus 696863 Viruses Viruses 52.8 2.51e-6   NR AMR72046.1 696863 g124433 i0 49 3.84905660377358 51 26 96.2 0 3 155 126 176 AMR72046.1 glycoprotein, partial [Sprivivirus cyprinus] diamond 612 52.8 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
32394822 32394822 PRJNA870096_S_NODE_115399_length_165_cov_2.459016_g113735_i0 PRJNA870096 115399 165 2.459016 4.0573764 Spring viraemia of carp virus 696863 Viruses Viruses 72.4 4.3e-13   NR NP_116744.1 696863 g113735 i0 64.8 0.981818181818182 54 19 98.2 0 4 165 335 388 NP_116744.1 nucleocapsid protein [Sprivivirus cyprinus] diamond 162 72.4 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus
32647099 32647099 PRJNA870096_S_NODE_63520_length_220_cov_1.237288_g61856_i0 PRJNA870096 63520 220 1.237288 2.7220336 Spring viraemia of carp virus 696863 Viruses Viruses 94.7 1.41e-20   NR NP_116748.1 696863 g61856 i0 64.4 0.995454545454545 73 26 99.5 0 1 219 1802 1874 NP_116748.1 polymerase [Sprivivirus cyprinus] diamond 219 94.7 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Sprivivirus Spring viraemia of carp virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;