RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA870096" and tax_phylum = "Fusobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Fusobacteriota · 12 ✖

tax_kingdom 1

bioproject 1

  • PRJNA870096 · 12 ✖

analysis 1

  • diamond · 12 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12328934 12328934 PRJNA870096_S_NODE_145230_length_150_cov_1.345794_g143566_i0 PRJNA870096 145230 150 1.345794 2.018691 Cetobacterium sp. 2071632 Bacteria Bacteria 97.4 5.54e-24   NR MEG0562204.1 2071632 g143566 i0 95.9 1.96 49 2 98 0 2 148 52 100 MEG0562204.1 pyruvate formate lyase family protein [Cetobacterium sp.] diamond 294 97.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp.
26833758 26833758 PRJNA870096_S_NODE_126721_length_158_cov_1.669565_g125057_i0 PRJNA870096 126721 158 1.669565 2.6379127000000002 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 110 1.16e-26   NR WP_294095311.1 527638 g125057 i0 100 0.987341772151899 52 0 98.7 0 157 2 594 645 WP_294095311.1 BamA/OMP85 family outer membrane protein [uncultured Cetobacterium sp.] diamond 156 110 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
27086883 27086883 PRJNA870096_S_NODE_64762_length_218_cov_1.097143_g63098_i0 PRJNA870096 64762 218 1.097143 2.39177174 unclassified Cetobacterium 2630983 Bacteria Bacteria 139 1.32e-37   NR WP_047383992.1 2630983 g63098 i0 98.6 0.990825688073395 72 1 99.1 0 1 216 325 396 WP_047383992.1 MULTISPECIES: beta-ketoacyl-ACP synthase II [unclassified Cetobacterium] diamond 216 139 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
27592451 27592451 PRJNA870096_S_NODE_130724_length_156_cov_1.274336_g129060_i0 PRJNA870096 130724 156 1.274336 1.98796416 unclassified Cetobacterium 2630983 Bacteria Bacteria 112 2.11e-27   NR WP_047384300.1 2630983 g129060 i0 100 1 52 0 100 0 156 1 130 181 WP_047384300.1 MULTISPECIES: DNA primase [unclassified Cetobacterium] diamond 156 112 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
27876416 27876416 PRJNA870096_S_NODE_94745_length_181_cov_1.391304_g93081_i0 PRJNA870096 94745 181 1.391304 2.51826024 unclassified Cetobacterium 2630983 Bacteria Bacteria 96.7 3.93e-22   NR WP_047383541.1 2630983 g93081 i0 94.2 0.861878453038674 52 3 86.2 0 180 25 50 101 WP_047383541.1 MULTISPECIES: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [unclassified Cetobacterium] diamond 156 96.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
27971149 27971149 PRJNA870096_S_NODE_93685_length_182_cov_1.381295_g92021_i0 PRJNA870096 93685 182 1.381295 2.5139569 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 118 1.73e-29   NR WP_047381297.1 1340502 g92021 i0 100 0.989010989010989 60 0 98.9 0 3 182 278 337 WP_047381297.1 SpoIID/LytB domain-containing protein [Cetobacterium sp. ZWU0022] diamond 180 118 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
29107937 29107937 PRJNA870096_S_NODE_93708_length_182_cov_1.381295_g92044_i0 PRJNA870096 93708 182 1.381295 2.5139569 Cetobacterium sp. ZOR 2071632 Bacteria Bacteria 120 1.1399999999999999e-31   NR WP_047394107.1 1339239 g92044 i0 98.3 0.989010989010989 60 1 98.9 0 181 2 185 244 WP_047394107.1 ankyrin repeat domain-containing protein [Cetobacterium sp. ZOR0034] diamond 180 120 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZOR0034
29707315 29707315 PRJNA870096_S_NODE_76410_length_200_cov_3.299363_g74746_i0 PRJNA870096 76410 200 3.299363 6.598726 Cetobacterium somerae 188913 Bacteria Bacteria 124 2.5699999999999997e-32   NR WP_023051507.1 188913 g74746 i0 98.5 3.96 66 1 99 0 199 2 282 347 WP_023051507.1 cysteine desulfurase family protein [Cetobacterium somerae] diamond 792 124 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
29960375 29960375 PRJNA870096_S_NODE_106251_length_172_cov_1.116279_g104587_i0 PRJNA870096 106251 172 1.116279 1.91999988 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 117 1.61e-30   NR WP_047383522.1 1340502 g104587 i0 100 0.994186046511628 57 0 99.4 0 171 1 56 112 WP_047383522.1 hypothetical protein [Cetobacterium sp. ZWU0022] diamond 171 117 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
31540642 31540642 PRJNA870096_S_NODE_90556_length_185_cov_1.246479_g88892_i0 PRJNA870096 90556 185 1.246479 2.30598615 Cetobacterium sp. 2A 2754723 Bacteria Bacteria 98.2 1.56e-22   NR WP_185880455.1 2754723 g88892 i0 77 0.989189189189189 61 14 98.9 0 184 2 266 326 WP_185880455.1 mannose-1-phosphate guanylyltransferase [Cetobacterium sp. 2A] diamond 183 98.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. 2A
32109958 32109958 PRJNA870096_S_NODE_117298_length_164_cov_1.586777_g115634_i0 PRJNA870096 117298 164 1.586777 2.60231428 unclassified Cetobacterium 2630983 Bacteria Bacteria 106 1.18e-25   NR WP_047384167.1 2630983 g115634 i0 100 0.98780487804878 54 0 98.8 0 164 3 291 344 WP_047384167.1 MULTISPECIES: bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II [unclassified Cetobacterium] diamond 162 106 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
32867808 32867808 PRJNA870096_S_NODE_97880_length_178_cov_2.229630_g96216_i0 PRJNA870096 97880 178 2.22963 3.9687414 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 97.8 2.59e-22   NR WP_297404590.1 527638 g96216 i0 88.2 2.57865168539326 51 6 86 0 153 1 170 220 WP_297404590.1 cysteine desulfurase family protein [uncultured Cetobacterium sp.] diamond 459 97.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;