RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA870096" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA870096 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13603796 13603796 PRJNA870096_S_NODE_42431_length_272_cov_1.589520_g40767_i0 PRJNA870096 42431 272 1.58952 4.3234944 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 135 9.19e-36   NR MES1915254.1 1215613 g40767 i0 76.7 20.8786764705882 86 20 94.9 0 260 3 339 424 MES1915254.1 ATPase of 26S proteasome regulatory subunit 4 [Cercozoa sp. M6MM] diamond 5679 136 0.992647058823529 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
26611839 26611839 PRJNA870096_S_NODE_147001_length_150_cov_0.897196_g145337_i0 PRJNA870096 147001 150 0.897196 1.345794 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 53.9 9.37e-8   NR AAP34642.1 227086 g145337 i0 51 1.96 49 22 98 1 3 149 44 90 AAP34642.1 small ubiquitin-like modifier [Bigelowiella natans] diamond 294 53.9 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
31003129 31003129 PRJNA870096_S_NODE_40074_length_280_cov_6.227848_g38410_i0 PRJNA870096 40074 280 6.227848 17.4379744 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 90.9 2.6500000000000003e-21   NR MES1907130.1 1215613 g38410 i0 50 1.63928571428571 76 34 80.4 2 274 50 35 107 MES1907130.1 proline iminopeptidase-like protein [Cercozoa sp. M6MM] diamond 459 90.9 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
32173453 32173453 PRJNA870096_S_NODE_28538_length_336_cov_1.638225_g26874_i0 PRJNA870096 28538 336 1.638225 5.504436 Gymnochlora stellata 67809 SAR_Eukaryotes SAR_Eukaryotes 61.2 1.04e-8   NR ACF24574.1 67809 g26874 i0 47.8 0.598214285714286 67 29 59.8 1 329 129 135 195 ACF24574.1 Ras-related small GTPase Rab5 [Gymnochlora stellata] diamond 201 61.2 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Gymnochlora Gymnochlora stellata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;