RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA870096" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA870096 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21252271 21252271 PRJNA870096_S_NODE_48117_length_254_cov_2.312796_g46453_i0 PRJNA870096 48117 254 2.312796 5.87450184 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 125 3.95e-33   NR XP_013754766.1 461836 g46453 i0 72.3 3.89763779527559 83 22 96.9 1 248 3 204 286 XP_013754766.1 serine/threonine-protein phosphatase 6 catalytic subunit [Thecamonas trahens ATCC 50062] diamond 990 125 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27276549 27276549 PRJNA870096_S_NODE_17003_length_442_cov_19.929825_g15356_i0 PRJNA870096 17003 442 19.929825 88.0898265 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 86.3 2.8e-18   NR XP_013758370.1 461836 g15356 i0 43.7 0.807692307692308 119 62 77.4 2 404 63 28 146 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 357 86.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27276554 27276554 PRJNA870096_S_NODE_40083_length_280_cov_4.839662_g38419_i0 PRJNA870096 40083 280 4.839662 13.5510536 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 75.5 3.49e-14   NR XP_013759670.1 461836 g38419 i0 49.4 0.825 77 38 82.5 1 41 271 143 218 XP_013759670.1 countin-2 [Thecamonas trahens ATCC 50062] diamond 231 75.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28950198 28950198 PRJNA870096_S_NODE_29888_length_328_cov_1.792982_g28224_i0 PRJNA870096 29888 328 1.792982 5.88098096 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 83.6 4.6e-16   NR XP_013763102.1 461836 g28224 i0 44.6 0.841463414634146 92 51 84.1 0 3 278 635 726 XP_013763102.1 protein tyrosine phosphatase [Thecamonas trahens ATCC 50062] diamond 276 83.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29328816 29328816 PRJNA870096_S_NODE_26429_length_350_cov_3.293160_g24765_i0 PRJNA870096 26429 350 3.29316 11.52606 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 77.8 4.19e-15   NR XP_013760584.1 461836 g24765 i0 46.3 0.685714285714286 80 43 68.6 0 7 246 84 163 XP_013760584.1 phosphate transporter [Thecamonas trahens ATCC 50062] diamond 240 77.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31192258 31192258 PRJNA870096_S_NODE_96215_length_180_cov_1.051095_g94551_i0 PRJNA870096 96215 180 1.051095 1.891971 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 59.7 1.66e-8   NR XP_013754103.1 461836 g94551 i0 52.7 0.916666666666667 55 26 91.7 0 169 5 2247 2301 XP_013754103.1 DNA polymerase [Thecamonas trahens ATCC 50062] diamond 165 59.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;