RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA864829" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA864829 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27497589 27497589 PRJNA864829_S_NODE_13663_length_173_cov_20.733871_g13577_i0 PRJNA864829 13663 173 20.733871 35.86959683 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 70.1 1.54e-13   NR AAW27122.1 6182 g13577 i0 93.8 0.554913294797688 32 2 55.5 0 44 139 18 49 AAW27122.1 SJCHGC01951 protein [Schistosoma japonicum] diamond 96 70.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
28918135 28918135 PRJNA864829_S_NODE_8808_length_210_cov_3.701863_g8722_i0 PRJNA864829 8808 210 3.701863 7.7739123 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 57 8.1e-8   NR AAX25032.2 6182 g8722 i0 75.8 0.957142857142857 33 8 47.1 0 38 136 104 136 AAX25032.2 SJCHGC04714 protein, partial [Schistosoma japonicum] diamond 201 57 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
29644137 29644137 PRJNA864829_S_NODE_11510_length_188_cov_1.136691_g11424_i0 PRJNA864829 11510 188 1.136691 2.13697908 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 115 1.59e-30   NR AAX25032.2 6182 g11424 i0 87.1 0.98936170212766 62 8 98.9 0 3 188 98 159 AAX25032.2 SJCHGC04714 protein, partial [Schistosoma japonicum] diamond 186 115 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;